Happy to share spFBA, our new framework to estimate #metabolic fluxes directly from #spatial_transcriptomics data.
nature.com/articles/s41540-0…
Fantastic team effort led by the usual suspect @ChiaraDamiani_ and made possible by a great collaboration between @unimib and @cnag_eu!
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1 Sep 2025
A bit more about our recent paper on #drought #recovery in #plants
If you watch the movie of #spatial_transcriptomics to the end you will start seeing recovery specific #genes popping up!
Thank you @salkinstitute @JoeEcker for all the support!
*ignore the hashtags in the post
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23 Jul 2025
🚨 New preprint out!
“Spatially resolved fetal and maternal cell contributions to severe #preeclampsia”
Years of work using #single_cell #spatial_transcriptomics to study the #fetal_maternal_interface.
Proud to share: biorxiv.org/content/10.1101/…
🤰 @UCLchildhealth @scastesparraka
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9 Jun 2025
DR-GEM is on GitHub github.com/Jerby-Lab/drgem
It was tested on #single_cell, #spatial_transcriptomics, and #Perturb_Seq data (outperforming other methods) and can be applied more broadly to other types of data too.
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Research Assistant/Associate (Neuron Signaling Lab, NUS, Singapore) @NUSingapore
To read the full job description and apply, see link in the thread!
#confocal_microscopy #image_analysis #spatial_transcriptomics #systems_neuroscience
#ScienceJobs
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3 Sep 2024
I'm very excited to share that I have recently joined the group of @MezaZepeda at @Wesche_Lab @Oslounivsykehus @UniOslo @CanCell_UiO as #PostDoc. A great opportunity to explore the #tumor_heterogeneity of #GIST #cancer by #Spatial_transcriptomics in the beautiful city of #Oslo 💪
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Postdoctoral position in spatial transcriptomics
Postdoctoral position in spatial transcriptomics at Karolinska Institutet
jobrxiv.org/job/karolinska-i…
#bioinformatics #spatial_multiomics #spatial_transcriptomics #ScienceJobs #job
jobrxiv.org/job/karolinska-i…
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Postdoctoral position in spatial transcriptomics
Postdoctoral position in spatial transcriptomics at Karolinska Institutet
jobrxiv.org/job/karolinska-i…
#bioinformatics #spatial_multiomics #spatial_transcriptomics #ScienceJobs #job
jobrxiv.org/job/karolinska-i…
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23 Feb 2024
We are hiring an #engineer in the field of #molecular_biology to work with #single_cell_RNA_sequencing and #spatial_transcriptomics in the context of #breast_cancer research. Apply here: finn.no/job/fulltime/ad.html…
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12 Jan 2024
Today, processing whole transcriptome for FFPE samples with #Cytassist #10xgenomics #Spatial_Transcriptomics @CarrerasIJC
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4 Dec 2023
It is a great week for #AAU's Genomic Medicine group and @FEMaLeEUProject. We host Prof. Grant Montgomery of Uni of Queensland, AU, here in Denmark. I was thrilled to present my preliminary data on #spatial_transcriptomics of #endometriosis after his lecture at...
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26 Oct 2023
【SPIRAL】
異なる条件から得られたspacial transcript dataを複数サンプルを統合・整合するための新たな手法
batch効果除去moduleと座標整合modeuleから構成
異なる試験、条件、技術からのデータでも上手く統合
Open Access
#SRT
#spatial_transcriptomics
#papers
doi.org/10.1186/s13059-023-0…
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25 Mar 2023
This thread is saved to your Notion database.
Tags: [Spatial_Transcriptomics, Benchmarkig_Tutorials, Threads]
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13 Feb 2023
I'm hiring a scientist to help me deal with all the spatial transcriptomic data that we already generated or will be generating over the next few years (tinyurl.com/yn97dahk). Please forward to anybody you think might be interested #spatial_Transcriptomics @AllenInstiute
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21 Jun 2022
Finally online @NatureNeuro Analysing spatially distributed stages of neurodegeneration in #multiplesclerosis brains using #spatial_transcriptomics & #proteomics
Great collaboration between the fugger lab @MRC_WIMM @NDCNOxford, @labs_mann & @inims_hamburg
nature.com/articles/s41593-0…
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14 Mar 2022
🚨Position open in the lab @MarciusLab🚨
Apply now if you like #spatial_omics #spatial_transcriptomics #spatial_anything!
👉🏻recruitment.crg.eu/content/j…
and join us! 👇🏻
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14 Feb 2022
Maniatis et al. (2019) shows how #spatial_transcriptomics (track changes in RNA sequence) provide key details to #ALS pathways. The paper suggests that the severity of ALS depends on the affected genes' proximity and how they coexpressed.
bit.ly/34wE1fD
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4 Nov 2021
Go Nazgol, it’s great to listen to your great talks at @ISDS2021 and @RDS, on your awesome study of CLE spatial transcriptomic. Can not wait to hear more about this @rashighi @tcelltracker @UMassChan #lupus #spatial_transcriptomics
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3 Jul 2021
#Spatial_transcriptomics at sub-micron resolution. Very smart use of the @Illumina sequencing-by-synthesis to generate the spatial barcoding!
11 Jun 2021
#Spatial_Transcriptomics | Microscopic examination using #SeqScope | Jun Hee Lee @umichmedicine @CellCellPress buff.ly/3pEoKPV
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#Spatial_Transcriptomics | Microscopic examination using #SeqScope | Jun Hee Lee @umichmedicine @CellCellPress buff.ly/3pEoKPV
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