Just 6 lines of code to run scGPT. I built nano-scGPT, the simplest implementation of single-cell foundation model scGPT (by @BoWang87, @HAOTIANCUI1), inspired by @karpathy's nanoGPT and @ChrisHayduk's minAlphaFold2. Written in pure PyTorch (~270 loc for model, ~230 loc for tokenizer) with minimal dependencies. nano-scGPT produces embeddings numerically equivalent to the original while running 1.38x faster, mostly from a clean forward pass plus torch.compile. The hope is to get more people up to speed with bio/cell AI/ML, which is arguably the most exciting AI/ML field right now, and to make bio foundation models like scGPT much more accessible to run, understand, and tinker with!

Hugging Face is the home for AI & ML across every domain, including biomedical! The @NIH just added the @huggingface Hub to its official list of Generalist Repositories for data sharing. NIH-funded? You can point to the Hub in your data sharing plan 🤗

🤗🤗🤗introducing Hugging Science -- the home of AI for science 🤗🤗🤗 open models and datasets are the powerhouse of science (see the PDB), but finding the models and data you actually need for your breakthrough is hard af you shouldn't need to scrape arxiv, own your own wetlab, fight a custom HDF5 parser, build a fusion stellarator, and beg for compute before you've trained a single epoch so we're changing that we've put all the best science on @huggingface in one place: - 78GB of genomics data - 11TB of PDE simulations - 100M cell profiles - 9T DNA base pairs - 13M molecular trajectories - 400k medical QA pairs and much more, all open, and all ready for training ( you can also now filter and search by domain, task, and keyword) we've put together all the biggest releases from our partners at NASA, Google, OpenAI, Meta FAIR, Arc Institute, Ginkgo, SandboxAQ, Proxima Fusion, NVIDIA, Ai2, OpenADMET, InstaDeep, Future House, Polymathic AI, LeMaterial, Earth Species Project, Merck, and Eve Bio if you're not sure where you fit in -- work on open challenges for problems that matter: including fusion stellarator design, ADMET, antibody developability, multilingual medicine, catalysis and materials, and scientific reasoning. we're already changing how science gets done: a fusion startup needed a benchmark for stellarator plasma confinement that didn't exist. @proximafusion shipped ConStellaration on Hugging Science: a leaderboard, dataset, and eval metrics, all in one place. a drug discovery team wanted to predict hPXR induction. OpenADMET put up a blind challenge: 11,000 compounds assayed at Octant, 513 held out, two tracks (pEC50 structure). Anyone in the world can train and submit. an antibody team at @Ginkgo released GDPa1, a developability dataset for stability, manufacturability, and immunogenicity prediction, with a live leaderboard scoring every submission. if you know a problem the ML community should be working on, let us know. make a challenge! this is about putting all the tools for solving science in one place. so we can hillclimb! → huggingscience.co

🤗🤗🤗introducing Hugging Science -- the home of AI for science 🤗🤗🤗 open models and datasets are the powerhouse of science (see the PDB), but finding the models and data you actually need for your breakthrough is hard af you shouldn't need to scrape arxiv, own your own wetlab, fight a custom HDF5 parser, build a fusion stellarator, and beg for compute before you've trained a single epoch so we're changing that we've put all the best science on @huggingface in one place: - 78GB of genomics data - 11TB of PDE simulations - 100M cell profiles - 9T DNA base pairs - 13M molecular trajectories - 400k medical QA pairs and much more, all open, and all ready for training ( you can also now filter and search by domain, task, and keyword) we've put together all the biggest releases from our partners at NASA, Google, OpenAI, Meta FAIR, Arc Institute, Ginkgo, SandboxAQ, Proxima Fusion, NVIDIA, Ai2, OpenADMET, InstaDeep, Future House, Polymathic AI, LeMaterial, Earth Species Project, Merck, and Eve Bio if you're not sure where you fit in -- work on open challenges for problems that matter: including fusion stellarator design, ADMET, antibody developability, multilingual medicine, catalysis and materials, and scientific reasoning. we're already changing how science gets done: a fusion startup needed a benchmark for stellarator plasma confinement that didn't exist. @proximafusion shipped ConStellaration on Hugging Science: a leaderboard, dataset, and eval metrics, all in one place. a drug discovery team wanted to predict hPXR induction. OpenADMET put up a blind challenge: 11,000 compounds assayed at Octant, 513 held out, two tracks (pEC50 structure). Anyone in the world can train and submit. an antibody team at @Ginkgo released GDPa1, a developability dataset for stability, manufacturability, and immunogenicity prediction, with a live leaderboard scoring every submission. if you know a problem the ML community should be working on, let us know. make a challenge! this is about putting all the tools for solving science in one place. so we can hillclimb! → huggingscience.co

This is exactly the move. Discoverability of real scientific data models on the Hub has been the missing piece for years. OpenMed's 1,000 medical models all sit on top of @huggingface infra. huggingscience.co becoming its own destination is overdue and welcome. 👏