Research on giant clam, coral and symbiosis with Symbiodiniaceae, occasionally wander into harmful algae bloom.

Joined June 2010
27 Photos and videos
Li Keat retweeted
Strong plant-mycobiome #phylosymbiosis emerges in a super cool common garden experiment. The authors made a synthetic mycobiome, exposed it to 38 species of host prairie plants, and VOILA. Do the hosts choose the fungi, or do the fungi choose the hosts? biorxiv.org/content/10.1101/…
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Li Keat retweeted
Global patterns of free-living Symbiodiniaceae biogeography 🌏parallel local-scale and in hospite symbiont community structures🪸 First chapter of my PhD thesis with @la__cientifica is now published! onlinelibrary.wiley.com/doi/… @jcu
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Li Keat retweeted
The #tidyplots paper is now published in @iMetaScience 🎉🥳🔥 Whenever you use tidyplots in your published work, consider citing doi.org/10.1002/imt2.70018 🙏 #rstats #dataviz #phd
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Li Keat retweeted
OUT NOW Challenging Paradigms Around the Role of Colony Size, Taxa, and Environment on Bleaching Susceptibility 📄 buff.ly/g8D6bmR
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Li Keat retweeted
The Hydractinia cell atlas reveals cellular and molecular principles of cnidarian coloniality #singlecell nature.com/articles/s41467-0…
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Li Keat retweeted
Looking to create stunning, data-rich maps in R? The tidyterra package makes it simple to integrate spatial data with ggplot2, bringing the power of the tidyverse to geospatial analysis. With tidyterra, you can work with spatial data just like any other data set in ggplot2. ✔️ Ease of Use: Simplifies map creation by integrating with ggplot2, using familiar functions and syntax, which reduces the complexity of working with spatial data. ✔️ Flexible Visualizations: Supports a variety of geospatial formats, allowing you to combine spatial data with other data sets, and work seamlessly with both raster and vector data. ✔️ Efficient Data Handling: Leverages dplyr-like functions for filtering, summarizing, and joining, which streamlines data processing and enables smooth integration between spatial and non-spatial data. ✔️ Beautiful Maps: Create detailed, customizable maps with less code and more flexibility, using the grammar of graphics you already know from ggplot2. The visualizations shown here are taken from the package website and demonstrate how tidyterra simplifies creating detailed maps using ggplot2: dieghernan.github.io/tidyter… If you’d like to learn more about ggplot2 and how to create stunning visualizations, check out my online course on “Data Visualization in R Using ggplot2 & Friends!” Learn more by visiting this link: statisticsglobe.com/online-c… #VisualAnalytics #tidyverse #DataAnalytics #ggplot2 #Rpackage #DataScience #Data #DataVisualization
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Li Keat retweeted
🚨🚨🚨Paper alert! Our paper on patterns of #coral macrosymbioses throughout the time is out! doi.org/10.1016/j.earscirev.…
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Li Keat retweeted
In a new Science study, researchers present CASTER, a tool that uses arrangements in DNA sequences known as site patterns to infer “species trees,” which are diagrams that depict the evolutionary relationships among species. The tool offers transformative potential for evolutionary research. scim.ag/42s677i
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Li Keat retweeted
16 Dec 2024
Allee effects require corals to lie within a few metres of their neighbours to achieve successful fertilisation. doi.org/10.1073/pnas.2418314… open access @GerardRicardo01 @ChrisDorop @PICRCPalau
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Li Keat retweeted
27 Dec 2024
🥳Celebrating the publication of my new book - DANGEROUS OR ENDANGERED?🥳 Come discover the fascinating facts and stories of 25 marine creatures living across the depths of the oceans. Find out what makes them dangerous, endangered, or both! #scicomm worldscientific.com/worldsci…
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Li Keat retweeted
15 Dec 2024
Only the unimaginative limit themselves to hypotheses when analyzing a new dataset. A thread on exploratory data analysis ⬇️
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In addition to applied statistics, I have another repository on Data visualization: "quick data vis" (github.com/cxli233/Quick_dat…). It used to be under "Online_R_learning" but now has its own repository on GitHub. I have used this content to teach 1st year grad students for 3 years.
Huh, my Online R learning GitHub repo hit 500 stars! github.com/cxli233/Online_R_…
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Li Keat retweeted
4 Dec 2024
Just got into Hades. I dunno why I slept on this game for years. It’s so damn good.
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Li Keat retweeted
29 Nov 2024
📢New Paper Alert📢 on corals and climate change in @ScienceMagazine Adaptation via natural selection could determine whether Acroporacorals persist under expected levels of global warming Hyperlinks & explainer thread below ⬇️ (1/12)
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Li Keat retweeted
This is the next big thing in reef science coming sooner or later, and I’m betting on sooner!! Thoroughly encourage anyone to click the link and take a look🔬Soon making high res 3D models of large scale reef sites will be standard for these habitats 🪸
Let's gooo!! 🌎 Try our 3D "Street View for Coral Reefs" prototype 2.0! 🪸 We did it! Today we've hit a new milestone! It's been a long journey, but we're one step closer.. We have a 50x times larger 3D Gaussian Splatting model now, covering over 1000 sq meters of corals. So stoked to tell you \o/ 🔵 Why? Coral Reefs are so precious, beautiful, incredibly complex and threatened ecosystems. They are dying fast.. But there's a way to protect and restore them! A lot of amazing people fighting for their life. We need to understand deeply how Coral Reefs function, what methods work, what don't, to coordinate precise action. They are a key to protect and restore other ecosystems. That's why we're building a digital twin of coral reef ecosystems -- our first product. 🔵 3d.wildflow.ai/C0r4Lm7 -- today you can try our second scrappy prototype (20% done) -- works best from computer. 🔵 What you see: it's a 3D "Street View" for Coral Reefs. Someone swam around a reef with a few GoPros, and you can now see high-res photorealistic 3D model of coral reef in the browser! It's a super cheap way of monitoring. Soon you will fly over square kilometres of reefs and see them in centimetre resolution. You can compare reefs in different countries and see how they evolve over time, easy way of getting rid of biases in data. 🔵 The prototype is terrible. Still work in progress (20%), just another sneak peek. We're moving fast and testing one hypothesis after another. Right now we still don't have a smooth progressive loading, there are some wacky splats here and there. 🔵 But it's already much better. This time we used 8382 images from GoPro 10 (instead of 70) and trained over 25x50m model (last time it was about 5x5 m). We respect correct geometry from Metashape (classical photogrammetry tools). Centimetre resolution! I think it's still the best in the world quality you can find. 🔵 Next steps: 3D time-series data (see how coral used to look like 3 months ago), 3D segmentation models, classifying coral species, adding other modalities (acoustics, eDNA, geospatial)... Allowing anyone to run analytics against all our data... Foundation models for biodiversity... Becoming the first generation that actually leaves behind nature better than we found it! 🪸 🔵 This version of a prototype wouldn't happen without these incredible people: - @BenWilliamsSci -- it's all Ben's fault I'm doing this now, his idea and support - @jtlrocketman -- Metashape/photogrammetry support - Greg Tkachenko -- powerful compute cluster - @rindahvida, @TimACLamont, @shebahopegrows Mars BuildingCoral team -- collecting the data, doing scientific research and restoring this reef you see - and many many more fantastic people! We've got terabytes of data from multiple orgs, now scaling the compute and processes. Soon you can play with more and more coral reefs! What a time to be alive! \o/
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Li Keat retweeted
@ICRSCoralReefs and the organizers of @ICRS_2022 from @BremenUni established a new award to support green strategies for coral reef-related events. Each year (2024-2028) up to $10,000 will be awarded to the host institutions organizing such events. See coralreefs.org/sustainabilit…
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Li Keat retweeted
Nets, cage traps and a RM250 fine for feeding to curb pigeon overpopulation in Penang. A child had contracted psittacosis, a disease mainly associated with pigeon droppings, & was diagnosed w inflammation of the brain. m.aliran.com/thinking-allowe… #Onehealth #pigeons
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