10 Photos and videos
Rajeeva Lochan Musunuri retweeted
1 Sep 2022
Very happy to officially share the high-coverage 1000 Genomes Project (1kGP) whole-genome sequencing (WGS) resource, out today in @CellCellPress! cell.com/cell/fulltext/S0092… (1/7)
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Rajeeva Lochan Musunuri retweeted
22 Sep 2021
My team @nygenome is growing. Looking for a highly motivated, detail-oriented Bioinformatics Programmer to help us develop novel tools for whole-genome sequencing data analysis. Please spread the word: nygenome-openhire.silkroad.c…
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From @lh3lh3 et al., if you were waiting for a description of what minigraph (lh3.github.io/minigraph) is doing that's higher-level than the C code :) . Looks like an exciting read!
The design and construction of reference pangenome graphs. arxiv.org/abs/2003.06079
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Rajeeva Lochan Musunuri retweeted
21 Nov 2019
Long walk to genomics: History and current approaches to genome sequencing and assembly sciencedirect.com/science/ar…
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Rajeeva Lochan Musunuri retweeted
20 Nov 2019
Long read sequencing of 1,817 Icelanders provides insight into the role of structural variants in human disease disq.us/t/3js36pw
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CNVs should be classified consistently between patients based on evidence, with a discussion of clinical significance for individual patient in the report say ACMG & @ClinGenResource in new technical standards go.nature.com/2CjrvhO #CNVs #medicalgenetics @AMPath @GeneticCouns
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Rajeeva Lochan Musunuri retweeted
9 Nov 2019
@lizworthey: Clinical review of 200 variants per patient takes about 3 hours. Variant fatigue is real! This needs to be faster #gi2019
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Rajeeva Lochan Musunuri retweeted
10 Jun 2019
1/ shapley values (and the Python shap package) have become an *integral* part of my machine learning methodology
I’m surprised by how many people still don’t know about them
github.com/slundberg/shap
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Rajeeva Lochan Musunuri retweeted
28 May 2019
the oom (out of memory) killer
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Rajeeva Lochan Musunuri retweeted
26 May 2019
Bioinformatician: Annotate all the data. Insights will be obvious!
Statistical geneticist: Cluster and plot big data. Insights will be obvious!
Software Engineer: Make an API to the data. Insights will be obvious!
PhD Advisor: Stare at data. Insights are obvious!
25 May 2019
Big data: Create huge datasets. Insights will be obvious!
Data science: Play with data. Visualize it. Insights will be obvious!
Machine learning: Feed data into cool algorithms. Insights will be obvious!
Statistics: The insights will never obvious.
#epitwitter #statstwitter
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Rajeeva Lochan Musunuri retweeted
3 May 2019
Our new work on understanding the architecture of complex traits "Trans effects on gene expression can drive omnigenic inheritance" is out today
cell.com/cell/fulltext/S0092…
Great collaboration with @XuanyaoLiu @yang_i_li
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Rajeeva Lochan Musunuri retweeted
28 Apr 2019
Population structure in the age of large-scale genotyped studies em.rdcu.be/wf/click?upn=lMZy…
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Rajeeva Lochan Musunuri retweeted
19 Apr 2019
Let's talk about references and citations.
References help readers discover relevant work and reproduce results.
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Rajeeva Lochan Musunuri retweeted
12 Apr 2019
There's a ton of pedantry in programming. This may be confusing until you realize that programmers spend 8 hours a day working with the world's most irritating pedant -- the computer. And the computer is .. kind of an a-hole to be honest.
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Rajeeva Lochan Musunuri retweeted
10 Apr 2019
Our review on #DeepLearning for Genomics is finally out - lot's of paper-digging led by @gokcen and @avsecz from @gagneurlab. Targeted at biologists who want to learn how 'AI' can be used for genomic modeling, from motif discovery to single cell genomics. nature.com/articles/s41576-0…
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Rajeeva Lochan Musunuri retweeted
8 Apr 2019
Perennially good advice on constructing a summary paragraph / abstract nature.com/documents/nature-…
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