Business consultant to bio-data software companies. Interests: Complexity, bio-data science, knowledge graphs, bioinformatics, Francis Bacon, Marcus Aurelius..
Joined May 2008
- Tweets 3,034
- Following 1,326
- Followers 1,468
- Likes 2,784
164 Photos and videos
Mark Pitman retweeted
Apr 26
We will know when we have “solved biology” when I can buy mangos in banana form factors at the grocery store.
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Mark Pitman retweeted
3 Jun 2025
Synthetic biology could enable new types of programmable therapeutics. Our new preprint introduces synthetic protein circuits that selectively trigger cell death in Ras-mutant cancer cells, with interesting advantages compared to existing approaches.
biorxiv.org/content/10.1101/…
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Mark Pitman retweeted
17 Oct 2024
New synthetic biology / gene regulation lab opening in Zurich! We’re studying how to control cell state transitions – for example, making diseased cells healthy or creating new cellular functions – using systematic perturbations, single-cell genomics and machine learning. 🧵1/4
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Mark Pitman retweeted
5 Jun 2025
💡IMO one of the best use of AI Scientist is to reanalyze data to find new insights.
Introducing #CellVoyager: AI Compbio Agent that makes new discoveries by autonomously analyzing papers/data, which we then validate🚀
New findings on aging, Covid, scRNAseq etc. Open source!
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Mark Pitman retweeted
20 Jan 2025
If you're interested in bioinformatics like I am, here's a free resource that offers a swift and structured journey to learning bioinformatics.
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How to grow (almost) any microbe. A New Hope. Using just 10% of a genome sequence, we can estimate the required environmental (salt, pH, oxygen, and temp) conditions for growing a microbe in the lab.
25 Mar 2024
New capability! Predicting microbial growth conditions from amino acid composition biorxiv.org/cgi/content/shor…
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Mark Pitman retweeted
27 Mar 2024
DIP-MS: ultra-deep interaction proteomics for the deconvolution of protein complexes - Nature Methods nature.com/articles/s41592-0…
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#proteomics #prot-paper
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Mark Pitman retweeted
20 Sep 2023
Artificial intelligence in mass spectrometry-based proteomics | buff.ly/3ZmkyGh #proteomics
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Mark Pitman retweeted
1 Jun 2023
‼️A guide to mass spec proteomics for beginners! Peer-reviewed and published AND OPEN ACCESS FOR THE NEXT SIX MONTHS! Answers to the questions:
-How does MS proteomics work?
-How do I perform a proteomic experiment?
-Where can I learn more?
#teammassspec
pubs.acs.org/doi/10.1021/acs…
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29 May 2023
It's my #Twitterversary! I have been on Twitter for 15 years, since 29 May 2008 (via @twi_age).
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30 Nov 2022
Working with Parkinson's Foundation around making sense of their patient registry for themselves and their research partners has been great. Thanks Tag.bio team. lnkd.in/gssUMEjz
Mark Pitman retweeted
29 Nov 2022
Excited about our new partnership with Parkinson's Foundation and Tag.bio. Through data mesh and data analytics we're helping them and their research partners really understand the fundamentals of PD. Congrats team. businesswire.com/news/home/2…
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Mark Pitman retweeted
10 Nov 2022
Very excited to share our new @natBME paper: graph NN discovers #tumor #spatial motifs that predict patient response to cancer treatments
We trained our #GNN on spatial proteomics of 10^6 cells from tumor samples to find disease motifs/subgraphs. Paper rdcu.be/cZpgJ
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Mark Pitman retweeted
11 Nov 2022
Nice study showing more precise mapping of cell states using both healthy atlas and matched control single-cell reference datasets @emmamarydann @teichlab @MarioniLab @humancellatlas @cziscience biorxiv.org/content/10.1101/…
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Mark Pitman retweeted
30 Oct 2022
Integrative network analysis interweaves the missing links in cardiomyopathy diseasome biorxiv.org/content/10.1101/…
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31 Oct 2022
Individual-specific functional epigenomics reveals genetic determinants of adverse metabolic effects of glucocorticoids cell.com/cell-metabolism/ful…
29 Oct 2022
Discovery and validation of human genomic safe harbor sites for gene and cell therapies cell.com/cell-reports-method…
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