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Paper out on the work done at NASA Glenn Research Center, using @scipipe for orchestration and #provenance tracking: bionics.it/posts/scipipe-at-…
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The link to the post is unfortunately broken now, but it is now available at livesys.se/posts/scipipe-at-…
Paper out on the work done at NASA Glenn Research Center, using @scipipe for orchestration and #provenance tracking: bionics.it/posts/scipipe-at-…
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SciPipe retweeted
24 Mar 2025
19 Nov 2024
An Empirical Investigation on the Challenges in Scientific Workflow Systems Development. arxiv.org/abs/2411.10890
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SciPipe retweeted
8 Sep 2024
It is mostly about how tasks are generated by a workflow system. In pull based systems, the outputs invoke the steps by dependency matching (e.g make). In push based (dataflow) systems, the inputs trigger the cascade. (for ref : academic.oup.com/gigascience…)
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SciPipe retweeted
15 May 2024
🧬 Why didn't Go break into Bioinformatics on a large scale, when it has had a phenomenal growth outside the field? 🧬
I wrote a short post on this question and on using #golang for #bioinformatics in general 👇
bionics.it/posts/golang-for-…
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"Towards Maintainable and Explainable AI Systems with Dataflow"
Interesting PhD Thesis by Andrei Paleyes at @Cambridge_Uni using SciPipe for its analysis. Topic at the heart of SciPipe's motivation too: Handling complex #machinelearning #sciworkflows! repository.cam.ac.uk/items/5…
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SciPipe retweeted
13 Apr 2024
Fun to see @scipipe being used at @NASAglenn in a new paper in @npj Microgravity: bionics.it/posts/scipipe-at-…
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Happy to see SciPipe having been used in this study: "Causal fault localisation in dataflow systems" dl.acm.org/doi/10.1145/35783…
#dataflow #sciworkflows
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27 Aug 2023
Gonomics: Uniting high performance and readability for genomics with Go | Bioinformatics | Oxford Academic academic.oup.com/bioinformat…
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Exciting to see more work on using #golang in #bioinformatics: "Gonomics: Uniting high performance and readability for genomics with Go" academic.oup.com/bioinformat…
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SciPipe retweeted
19 May 2023
scipipe: Robust, flexible and resource-efficient pipelines using Go and the commandline
⭐️ 998
#golang
github.com/scipipe/scipipe
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Wohoo! We're happy to see that we just reached 1000 @github ⭐️:s! Thank you all for the support! 🤩 And... expect some work on fixes and improvement in the summer! #sciworkflows github.com/scipipe/scipipe
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17 Mar 2023
Looking for #Bioinformatics courses on #GitHub? 🧐 You're in luck! 🍀@choup @P_Palagi and I from @ISBSIB have created #Glittr (glittr.org): a webapp that helps you find and compare awesome training materials. 🎉
How does it work? And how can you join us? Read on! 👇
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SciPipe retweeted
3 Apr 2023
✨The report for the Workflows Community Summit 2022 has been published: doi.org/10.5281/zenodo.77506…
#SciWorkflows #workflow #HPC #AI #FAIR #QuantumComputing #Science
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We're glad to see SciPipe being used to explore properties of #dataflow in this nice paper by Andrei Paleyes & Neil Lawrence @lawrennd
It makes a strong case for how the #dataflow paradigm adds key causal info already at the design stage #sciworkflows
arxiv.org/abs/2304.11987
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SciPipe retweeted
28 Apr 2023
“We've generated a humongous amount of data and it's available for everybody in the world” says @KltLab, after analyzing genomes of 240 mammals, in international research project led by @UU_University and @broadinstitute in collaboration with SciLifeLab.
scilifelab.se/news/scilifela…
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SciPipe retweeted
13 Apr 2023
I have found my people. 🥹 What an exciting initiative by @WorkflowsCI!
workflows.community
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Retweeting these news about our older cousin SciLuigi 😉 #sciworkflows
🎉 Hooray, after learning it is still used at some major companies, I just pushed a new release of SciLuigi [1] tonight, for the first time in ~3 years 🎉
github.com/pharmbio/sciluigi…
[1] Wrapper around @bernhardsson's Luigi, allowing dep defs outside of tasks & more #sciworkflows
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