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SequenceServer Cloud BLAST @sequenceserver

Get genomic answers fast, with SequenceServer Cloud BLAST

Joined August 2021
  • Tweets 124
  • Following 2
  • Followers 32
39 Photos and videos
SequenceServer Cloud BLAST retweeted
Seth Barribeau@Bumble_Boss
2 Mar 2025
Sequence server sequenceserver.com allows you to build custom cloud instances with the genetic resources you need with some excellent visualizations, download options, and collaboration tools #Genetics #blast #Genomics

Custom servers for BLAST search for your team and data

Run BLAST and interpret your custom data. Flexible BLAST visualization and output formats so you can focus on the science. Secure, private, and fast.

sequenceserver.com
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SequenceServer Cloud BLAST retweeted
Seth Barribeau@Bumble_Boss
2 Mar 2025
NIH resources like BLAST are fundamental to so many researchers. Sadly, these might have been affected by the recent governmental overhaul. We need to reinstate these public goods but folks still need to get their work done. In the meantime, check below #NIH #Bioinformatics
This tweet is unavailable
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Thanks @konekomaro !!
えっちなおひさま2.5＠蛍源爺(輪乳業)@konekomaro
4 Feb 2024
SequenceServer はやられたな。やりたいこと全部やられてるし。
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We're delighted to see SequenceServer being used for cool non-model organisms :)
K.Koiwai@KKo1wa1
26 Mar 2024
Replying to @KKo1wa1
transXpress simplifies the use of best-practice methods and up-to-date software for de novo transcriptome assembly, and produces standardized output files that can be mined using SequenceServer to facilitate rapid discovery of new genes and proteins in non-model organisms.
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And @hamajit - we are delighted that SequenceServer is helping you do some very cool research on the evolution of sex and multicellularity in Volvox
浜地 貴志@hamajit
13 Dec 2024
Sequenceserverのヘビーユーザーです。 sequenceserver.com/doc/
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The season’s most romantic meet-cute mystery, how do gametes released into the environment recognize their own #species?🤔 New #research reveals #proteins on the unfertilized eggs might be key—at least in ribbon worms!🪱 👏 Congrats to the authors! Link👇 #science #genetics
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Check out the paper here: doi.org/10.3390/biom14121545 Happy BLASTing!
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Will we ever stop celebrating #databases? Not likely! They offer high-quality #datasets to scientists worldwide. Perfect example: Reefgenomics(.Org)🪸 Published in 2016, this #BLASTfromthePast is still being updated with #coral #genomes today! We're proud to be a part! Links👇
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Check out the paper here: doi.org/10.1093/database/baw… And the database itself here: reefgenomics.org Happy BLASTing!

Reefgenomics.Org - a repository for marine genomics data

Over the last decade, technological advancements have substantially decreased the cost and time of obtaining large amounts of sequencing data. Paired with

academic.oup.com
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You’ve heard of blue-blooded, but that pales (literally) in comparison to white-blooded icefishes 🐟, the only #vertebrates without #hemoglobin! 🩸 Shin et al., (with help from #SequenceServer!) reveal that #gene loss may be to blame. Congrats to the authors! 🎉 Link👇 #genomics
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Check out the paper here: doi.org/10.1186/s12864-024-1…

Gene loss in Antarctic icefish: evolutionary adaptations mimicking Fanconi Anemia?

BMC Genomics - The white-blooded Antarctic icefishes is a representative organism that survive under the stenothermal conditions of the Southern Ocean without the hemoglobin genes. To compensate...

link.springer.com
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Thanks to new #research on gars & bowfins, the evolution of #vertebrate #immune surveillance just got more garbled🐟Turns out these #fish have their own PSMB8 types, completely unique among vertebrates! Fascinating! 🧬 Congrats to the authors! Glad #SequenceServer could help!
bioRxiv Evobio@biorxiv_evobio
4 Nov 2024
Holostean genomes reveal evolutionary novelty in the vertebrate immunoproteasome that have implications for MHCI function biorxiv.org/cgi/content/shor… #biorxiv_evobio
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Open Sesame!🪄By now you know we love an open access #database! Well, SesamumGDB, the brand-new #genomic database for cultivated & wild #sesame #species, is here!🌿 Plus, with #SequenceServer integration, you can #BLAST away to your heart’s content!🧬Link 👇 Happy BLASTing!
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Check out the paper here: doi.org/10.1093/database/baa…

SesamumGDB: a comprehensive platform for Sesamum genetics and genomics analysis

Abstract. Sesame (Sesamum indicum L., 2n = 26) is a crucial oilseed crop cultivated worldwide. The ancient evolutionary position of the Sesamum genus highl

academic.oup.com
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🌻Sunflowers,🥬lettuces, &🫖chamomile: all from the #Asteraceae family, which covers 7% of flowering #plant diversity! This makes AMIR, a multi-omics #database with 74 species, 4.4M annotated #genes, & #SequenceServer BLAST capabilities, a huge deal! Congrats Liu et al. Links👇
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You can find the paper here: doi.org/10.1093/nar/gkae833 ... And the database here: yanglab.hzau.edu.cn/AMIR/hom… Happy BLASTing!

AMIR: a multi-omics data platform for Asteraceae plants genetics and breeding research

Abstract. As the largest family of dicotyledon, the Asteraceae family comprises a variety of economically important crops, ornamental plants and numerous m

academic.oup.com
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🦠 K. pneumoniae, a key culprit for #septicemia & UTIs, showed increasing #antimicrobialresistance between 2019-2021 based on whole #genome sequencing by Gamaleldin et al. 🧬 Concerning, but work like this is crucial for tracking the rise in resistant #pathogens. Link 👇
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Find the paper here: doi.org/10.1186/s12864-024-1…

Comparison of genotypic features between two groups of antibiotic resistant Klebsiella pneumoniae...

BMC Genomics - Klebsiella pneumoniae is a common pathogen capable of causing a wide range of infections. Antibiotic resistance complicates treatment of these infections significantly. We are...

link.springer.com
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🦠 Bacteria-on-bacteria warfare in #milk might help treat Staph aureus & MRSA! 🥛Check out this #BLASTfromthePast where researchers isolate bacteriocins—bacteria's own bacteria-killing weapon—from bovine milk & test their inhibitory power on S. aureus and MRSA. Link👇 #genetics
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Here's the link, check it out! doi.org/10.1128/AEM.01015-17

Bacteriocins of Non-aureus Staphylococci Isolated from Bovine Milk | Applied and Environmental...

ABSTRACT Non-aureus staphylococci (NAS), the bacteria most commonly isolated from the bovine udder, potentially protect the udder against infection by major mastitis pathogens due to bacteriocin...

journals.asm.org
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