I had a fun time writing a deep dive on Diffusion Language Models - with an equation walkthrough and Excalidraw sketches ✏️
In Part 1, I focused on the method: what does “noise” even mean for text, and how do DLMs denoise back into tokens?
winterrykim.github.io/blog/2…
Heading to #NeurIPS in San Diego (AI4Science Workshop) to present our expanded RNA secondary structure dataset with structure-aware train–test splits for improved scalability and robustness.
Preprint:
tinyurl.com/nbaj8h3v
Dataset: zenodo.org/records/15319168
Come say hi!
👋We’re excited to launch DSG2-mini, our newest AI protein design model, now available in DiffuseSandbox⏳🎁, our new app for protein binder design. Click through to design a protein yourself! diffusesandbox.com 1/
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I’m pleased to share that my research with @seowondeog12052 has been accepted to RECOMB 2025 (Poster) and IEEE EMBC 2025 (Paper)!
Preprint: arxiv.org/abs/2501.14469
We introduce a generative approach to pesticide design—optimizing small molecules to reduce toxicity.
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Especially want to thank the Innovative Genomics Institute for providing funding to travel and attend RECOMB 2025. And to the organizers @RECOMB_conf @IEEEembs.
I’m especially grateful to Prof. Jamie Cate and Dr. Conner Langeberg for their early guidance in helping me get involved in research. Looking forward to meeting other researchers and learning at RECOMB!
#RECOMB2025#EMBC2025#AI4Science#MLforBio
Join us on Monday 3/10 for our latest installment of the BioML @ Berkeley seminar series! We'll be learning from the exceptional Elana Simon (@ElanaPearl) about mechanistic interpretability in BioML.
lu.ma/guiyjbf9
MeTown is at CES 𝟐𝟎𝟐𝟓!
Come experience our hyper-realistic fashion 3D digitization service in person - EVOVA 3D ShowRoom.
📍 Booth: 𝐕𝐞𝐧𝐞𝐭𝐢𝐚𝐧 𝐄𝐱𝐩𝐨, 𝐇𝐚𝐥𝐥 𝐆, 𝟔𝟐𝟖𝟏𝟕
📧 Contact: info@metown.co.kr
#Metown#CES2025#InnovationAward#3DRendering#ECommerce
Excited to share work I had the opportunity to co-lead at @czbiohub! We introduce DynaCLR, a self-supervised framework for modeling cell dynamics during perturbations via contrastive learning of time-lapse data.
arxiv.org/abs/2410.11281
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The largest protein generative model, ESM-3, was released this morning and one of its training breakthroughs involves FP8 precision. Here’s some key takeaways on how FP8 works with visuals.
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I drew a GPU timeline that includes the evolution of features starting from the Volta series all the way up to the recent Blackwell series.
I hope it helps other people like me who dug through white papers every time they forgot which features are in which!
My research interests or topics are genomics structure prediction and protein therapeutics, I learned so much by reading Abhi’s substack.
I wanted to share these resources knowledge I personally earned with more Korean readers who are entering this field.
How does AlphaFold3 predict the structures of proteins, DNA/RNA, ligands and other biomolecules? I did a deep dive into protein folding, how AlphaFold works and the new model. Here’s what I learned:
(resource in thread)
Snaps from last night's BioML lecture on protein engineering with AlphaFold2, ProteinMPNN, and RFdiffusion, led by the incredibly talented @aakarshv1.
Recording will be up soon – next event on Feb 26 w/ Thomas Kalil, CIO of Schmidt Futures. sam.jajoo.fun/notes/bioml
Come to Berkeley tomorrow to learn about the architectures behind the latest advancements in protein design from @aakarshv1! Link to register in Samarth’s tweet 👇, food will be provided :)
Come through tomorrow at 8pm to hear @aakarshv1 talk about machine learning methods for protein design!
Trust me, these models are really cool and the dream of protein design is incredibly ambitious.
Both in-person and on a zoom stream.
lu.ma/4baniw2s
Come hear @aakarshv1 talk about machine learning for protein engineering! The talk will give an overview of AlphaFold2, RFDiffusion, and ProteinMPNN, three models that have been instrumental in the areas of protein structure prediction, and design. lu.ma/4baniw2s