Tracking objects inside deforming bodies is difficult. For analyzing neural activity in C. elegans, one needs to track and segment neurons in the worm brain, which bends, stretches, and compresses during 4D microscopy recordings. However, co-first authors Core and Mahsa ...
Targettrack from the
@sjrahi lab is a deep-learning-based pipeline for automatic tracking of neurons within freely moving C. elegans. Using targeted augmentation, the pipeline requires less manually annotated training data.
@epfl_en @VladislavSusoy
nature.com/articles/s41592-0…