CTO and cofounder @ParseBio. Co-developer of single cell combinatorial barcoding method SPLiT-seq. Making genomics more scalable, flexible, and accessible.
Joined October 2016
- Tweets 108
- Following 848
- Followers 1,037
- Likes 286
5 Photos and videos
28 Feb 2025
amazing
27 Feb 2025
Check out our two new papers with new single-cell tech/methods/data!
1. Phospho-seq: Multi-modal profiling of intracellualar proteins
nature.com/articles/s41467-0…
2. Systematic Perturb-seq of signaling regulators (2.6M cells, 6 cell lines, 1500 perturbations)
nature.com/articles/s41556-0…
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Charlie Roco retweeted
30 Apr 2024
So excited to work with @ParseBio to share my work studying the role of Sox9 in promoting branching morphogenesis in mouse intrahepatic bile ducts (IHBDs).
I will highlight how Parse scRNA-seq enabled discovery of a target to rescue IHBD branching in mice lacking Sox9.
29 Apr 2024
Hannah Hrncir of @graczlab – Emory shares her recent work on the genetic controls of biliary duct formation. The pictures of these complex branching structures will amaze you, they’re beautiful.
Virtual Live Webinar: May 1, 9:00 AM PST
resources.parsebiosciences.c…
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Charlie Roco retweeted
30 Oct 2023
Are you attending #ASHG23? Don't miss our featured education session with Rahul Satija (@satijalab) from the New York Genome Center. Lunch will be provided for the first 50 attendees.
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Charlie Roco retweeted
4 Oct 2023
📣 "Single cell sequencing using Evercode shows a superior outcome compared to 10x Genomics™"
Watch the full video here 👉 parse.bio/3LOcdFA
#comparisonstudy #research #singlecell
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7 Sep 2023
Looking forward to it!
31 Aug 2023
Join @CharlieRoco, Co-Founder and CTO of @ParseBio as he reveals important insights in his talk, "Expanding Capabilities in Single Cell RNA Sequencing".
Don't miss this opportunity to gain new perspectives at #FoGBoston #RNA #SingleCell
Find out more: hubs.la/Q020yyfg0
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Charlie Roco retweeted
26 Jun 2023
Happy to present our new preprint! We ran a head-to-head comparison of sample multiplexing reagents for single-cell RNA-Seq on the same samples on the same day. 1/9 biorxiv.org/content/10.1101/…
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Charlie Roco retweeted
2 Apr 2023
That was nuclei extraction extraction, using @S2Genomics singulator and fixation w/ @ParseBio kits (lucky 13 kits!). Looking forward to the next steps 👩🏻🔬
And how was your week? #postdoclife #biology
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29 Mar 2023
Big thanks to @ToonSwings and the entire #RNGS23 organizing committee for inviting me to represent @ParseBio in beautiful Ghent! What a great conference - hope to be back again soon!
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Charlie Roco retweeted
21 Jul 2022
1/ We previously generated a 1M cell scRNA-seq dataset with 24 Type1 Diabetes/Control PBMC samples. Now Daniel Diaz, one of our Bioinformatics Application Scientists, has built a tutorial showing how you can easily analyze this dataset using existing single cell tools.
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Charlie Roco retweeted
14 Jul 2022
You can now do a deep dive into our 1 million cell T1D dataset! It was generated from 24 samples fixed over the span of 3 weeks and barcoded all together in a single run. The donor data was integrated with Harmony to generate the UMAPs. #singlecell hubs.la/Q01gTVjX0
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Charlie Roco retweeted
6 Jul 2022
FYI this vignette has now been updated with some of our more recent recommendations for handling SPLiT-seq/ParseBio data with {alevin-fry}. Namely: it's important to quantify in U S A mode with a splici reference, and properly import all those counts into R with {fishpond}
10 Feb 2022
Happy to share a little side effort in collaboration with @gshrma_ @nomad421: you can now analyze SPLiT-seq (or @ParseBio) scRNA-seq data using alevin-fry!
combine-lab.github.io/alevin…
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Charlie Roco retweeted
28 Jun 2022
We had a blast helping to teach a course on #SingleCell profiling and analysis in #neuroscience to the next generation of researchers with #Cajal! The future of single cell is bright! @cgfbordeaux @Neuro_Bordeaux @HjerlingLeffler @Cajal_Training @AMunozManchado @KharchenkoLab
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Charlie Roco retweeted
21 Jun 2022
🎙️@KharchenkoLab & @ParseBio will give their talks as part of our #Cajal course on Single #cell profiling and analysis in #neuroscience
📍@cgfbordeaux
🎟️Free entry
@Neuro_Bordeaux @HjerlingLeffler @Cajal_Training
@KharchenkoLab @AMunozManchado
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Charlie Roco retweeted
21 Jun 2022
First mega kit through @ParseBio and the sub library looks great after sequencing! So convenient to run sub libraries and know what’s going on before the big run. Estimating close to 900k cells for this exp!! Looking forward to the final results but so far so good.🤞🏼
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20 Jun 2022
Here we go! Teaming up with @Decode_Science for the @ParseBio Australian roadshow.
Perth -> Adelaide -> Melbourne -> Sydney
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20 Jun 2022
Perth Monday 20th - eventbrite.com/e/parse-biosc…
Adelaide Tuesday 21st eventbrite.com/e/parse-biosc…
Melbourne (Monash) Wed 22nd eventbrite.com/e/parse-biosc…
Melbourne (Parkville) Thursday 23rd eventbrite.com/e/parse-biosc…
Sydney Friday 24th
eventbrite.com/e/parse-biosc…
Charlie Roco retweeted
15 Jun 2022
Parse Biosciences Roadshow - Single Cell 3.0 Scaled & Simplified, Adelaide Tickets, Tue 21/06/2022 at 10:00 am | Eventbrite eventbrite.com/e/parse-biosc…
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1 Jun 2022
meet our team! if you're interested in joining feel free to reach out!
1 Jun 2022
Culture matters. We asked our team to introduce themselves in a quick video and we got this gem! We love this video and thought you'd like meet the people that are pushing #singlecell further. Want to be included in our next video? Reach out! hubs.la/Q01c3PtW0
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