Chaste is a simulation package for computational biology & physiology. With individual-cell based modelling and continuum PDE codes.
Joined October 2012
- Tweets 104
- Following 16
- Followers 250
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6 Photos and videos
10 Dec 2024
Last chance to register for the 8-10th January cell based Chaste modelling workshop @UoNCMMB - applications close Friday: chaste.github.io/workshops/2…
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8 Oct 2024
🚨 Chaste workshop registration open now!
We'll be holding a Chaste workshop, focussed on our new individual-cell based models and python bindings, at @UniofNottingham Jan 8-10th 2025. Some travel funding available. Apply today!
chaste.github.io/workshops/2…
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Chaste Development retweeted
29 Nov 2021
Reminder that @struttlab and I have a PhD studentship available, blending modelling and experiments to understand tissue patterning in a fluctuating environment findaphd.com/phds/project/bb…
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Interested in #spatial dynamics of cells and their #chemical environment? Check out this new tool developed by our great PhD student @JohnsonConnah ! biorxiv.org/content/10.1101/…
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Chaste Development retweeted
29 Sep 2021
After a nice talk on cytoneme-mediated patterning by @kyz1024 (what a nice application of @Chaste_Project!) we conclude the morning with a tour de force by @BlindMath: some modern challenges in pattern formation (featuring Turing cats 🐈)
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Chaste Development retweeted
18 Jun 2021
@Chaste_Project we are organising a virtual meeting (1st July) to develop a support network for all Students and Post-Docs using (cell-based) Chaste. If you want to join and get involved sign up! DM for queries. forms.gle/K14RRLqUKp3bs6SP8
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Chaste Development retweeted
4 May 2021
"Seven challenges in the multiscale modeling of multicellular tissues", my review/opinion piece with @DIYOzzy, is now published online: onlinelibrary.wiley.com/doi/… (Special thanks to anonymous reviewer 2 for suggesting 7 additional references, all featuring the same author)
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Chaste Development retweeted
7 Apr 2021
🎉 Our new combined experimental and modelling paper of cytoneme-mediated tissue patterning in zebrafish brains is out! 🥳 Simulations powered by @Chaste_Project 🦾
7 Apr 2021
Vangl2 is important for cytoneme formation and paracrine Wnt signaling! @Scholpp-lab @LSI_Exeter @UniofExeter @dmvirshup @kyz1024 @BBSRC
go.nature.com/3wzOGiq
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Chaste Development retweeted
19 Mar 2021
@struttlab and I may have money for a postdoc modeller for 6-9 months, starting soon. Some planar polarity, some growth, some @Chaste_Project. Please contact me for details, or forward to anyone who might be interested. Thanks!
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Chaste Development retweeted
7 Jan 2021
Thank you for including our recent preprint ➡️doi.org/10.1101/2020.12.29.4… in this week's #mathonco newsletter @mathoncbro 😊
Here's a video from our preprint on colonic #crypt evolution produced with @Chaste_Project.
🟡wild-type 🔵MMR-def. ⚪️APC /- ⚫️APC-/- cells
7 Jan 2021
This week in Math Oncology 144:
{environmental/neighborhood effects in spheroids, eco-evo in cancer, PKPD combination therapy, evolutionary games, post-hypoxic invasion, and more}
thisweekmathonco.substack.co…
#MathOnco
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Chaste Development retweeted
9 Jul 2020
If you're interested in multiscale modelling of multicellular tissues, I've written a short piece with @DIYOzzy on some of the ongoing challenges associated with doing this: preprints.org/manuscript/202…
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Chaste Development retweeted
23 Jun 2020
5. We use a cell-based vertex model using @Chaste_Project to confirm that a tangential apical force, as provided by shear stress, can result both in the reported bias in cell shape and in the observed elongating outgrowth.
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Chaste Development retweeted
5 Feb 2019
Happy to share our new invited review on cell-based modeling in cancer, in @ASCO's JCO Clinical Cancer Informatics. We include curated collections at @Science_Open, making it a living review. Nicely done, @jmetzcar, @YafeiWang89, and @rheiland!
ascopubs.org/doi/full/10.120…
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Chaste Development retweeted
13 Mar 2020
Just published in #JOSS_theOJ: 'Chaste: Cancer, Heart and Soft Tissue Environment' doi.org/10.21105/joss.01848
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Chaste Development retweeted
3 Dec 2019
And here comes the (obligatory) plug for @Chaste_Project, and test-driven development - check out the tutorials and wiki GitHub.com/Chaste
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28 Oct 2019
A snapshot from this @Chaste_Project simulation by Pras Pathmanathan:
youtube.com/watch?v=eV9ajG-P…
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13 Sep 2019
Version 2019.1 has been released! Includes C 14 support, new features and bug fixes. Supports Ubuntu up to 19.04. Release notes here: chaste.cs.ox.ac.uk/chaste/tu… Download here: github.com/Chaste/Chaste/rel…
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13 Sep 2019
We're also happy to announce much-improved docker support, making it even easier to get Chaste working, whatever your favourite OS is. Thanks @b_d_evans!
github.com/Chaste/chaste-doc…
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20 Dec 2018
Version 2018.1 has been released. Includes improved C 11support and some bug fixes. Supports Ubuntu up to 18.10. Release notes here: chaste.cs.ox.ac.uk/chaste/tu… Download here: github.com/Chaste/Chaste/rel…
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23 Dec 2017
Version 2017.1 has been released. C 11, big infrastructure changes, plus many improvements and bug fixes. Supports Ubuntu up to 17.10. Release notes here: goo.gl/PocNmW Download here: goo.gl/eDYRSB Happy holidays!
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