Computational biologist modeling immunity, cancer, viruses. Develop BioNetGen (bionetgen.org). Ref papers and ⚽️ (he/him) #blacklivesmatter 🌻🇺🇦
Joined November 2008
- Tweets 456
- Following 962
- Followers 463
- Likes 2,091
45 Photos and videos
Jim Faeder retweeted
4 Feb 2024
It is clear empirical reality and arguably a fundamental axiom of science that you cannot accurately predict what research will prove to be important in the long run. And yet we continue to pretend that we can, and, what's worse, we put incredibly high stakes on the outcome.
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Jim Faeder retweeted
9 Jan 2024
So proud of this paper! It has been a privilege to develop this project with my first PhD student Neha Cheemalavagu, together with @DoctorF sciencedirect.com/science/ar…
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6 Aug 2023
Hi @DaleJohnsonESPN, is it strange for the AR to be wearing the watch with the GLT signal? On the video you can see her raise her arm in response to the buzzing.
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Jim Faeder retweeted
21 May 2023
So proud of this work lead by @CMUPittCompBio student Neha Cheemalavagu with collaborator @DoctorF. We systematically identify genes in global transcriptomic data that are predicted by dynamic signaling features and kinase perturbation.
21 May 2023
Predicting gene level sensitivity to JAK-STAT signaling perturbation using a mechanistic-to-machine learning framework biorxiv.org/cgi/content/shor… #bioRxiv
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Jim Faeder retweeted
26 Dec 2022
It’s done!! 🚀🚀🚀🚀
Introducing Addy - Your AI email assistant 🤖
Addy is powered by ChatGPT and can write emails for you 10x faster in your preferred style and tone.
If you want early access, please retweet and comment below and I’ll send you an invite code!
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Excited to present a rule-based #CellCycle model that explains location and dynamics of 16 observables at #ICSB2022 ! Check out the #SBML, @bionetgen and #PEtab model specifications on GitHub (bit.ly/3COdtEM). Feel free to improve/extend model or data with a PR.
#sysbio
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Jim Faeder retweeted
28 Aug 2022
bioZone is now officially an award winning YouTube channel 😉
thanks to @CMUPittCompBio for acknowledging our commitment to outreach
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Jim Faeder retweeted
13 Jul 2022
Congratulations 👏👏👏 to the awardees of this year’s SysMod poster prizes at #ISMB2022 🥁
➢ 3ʳᵈ: Shaimaa Bakr @stanford_ee
➢ 2ⁿᵈ: Kang Jin @CincyInformatix
➢ 1ˢᵗ: Caroline I. Larkin @PittTweet
ALT Prize Name: 1st Best Poster Award winners name and affiliation: Caroline I. Larkin, University of Pittsburgh Award winner title of abstract: A Mechanistic Model of Alphavirus Replication within a Mammalian Host Cell
ALT Prize Name: 2nd Best Poster Award winners name and affiliation: Kang Jin, Cincinnati Children’s Hospital Medical Center Award winner title of abstract: CellDrift: Inferring Perturbation Responses in Temporally-Sampled Single Cell Data
ALT Prize Name: 3rd Best Poster Award winners name and affiliation: Shaimaa Bakr, Stanford University Award winner title of abstract: Identifying key multifunctional components shared by critical cancer and normal liver pathways via sparseGMM
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Jim Faeder retweeted
Final schedule for upcoming Workshop. If you haven't yet registered, it is too late to be considered for the hands-on "Project Track". But if you want to join for the 3 outstanding Plenary talks (or any other session) please direct message and we'll send you the link.
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Jim Faeder retweeted
14 Mar 2022
"We argue the lower severity of Omicron is a coincidence and that ongoing rapid antigenic evolution is likely to produce new variants that may escape immunity and be more severe"
nature.com/articles/s41579-0…
@pvmarkov @ArisKatzourakis @NatureRevMicro
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10 Mar 2022
“Want to promote diversity in science? Offer better support.”nature.com/articles/d41586-0…
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Jim Faeder retweeted
25 Feb 2022
I'm giving a presentation about the best practices for giving scientific presentations. What are your biggest and best presentation tips that you'd pass along to trainees?
Please RT!
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Jim Faeder retweeted
24 Feb 2022
To deny gender-affirming resources to trans kids and to threaten their parents and guardians with claims of child abuse is MONSTROUS.
If you want to help, support groups like @EqualityTexas.
#protectTransKids
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Jim Faeder retweeted
11 Oct 2021
Paper just published in Briefings in Bioinformatics - A protocol for dynamic model calibration ift.tt/3oPOf22 #bioinformatics
Great collaboration with @AlexFVillaverde @dilan_pathirana , @JanHasenauer and @fabfrohlich in the context of the @CanPathPro project
27 May 2021
New paper out - how to calibrate dynamic (ODE) models.
Step-by-step instructions, and code!
Another nice collaboration in the framework of @CanPathPro
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Jim Faeder retweeted
8 Nov 2021
My team has just updated our already large database of PhD/Graduate fellowships and graduate student research funding opportunities.
We found 200.
For each fellowship, we provide link, description, deadline, eligibility, etc.
Download here: research.jhu.edu/rdt/funding…
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In this #TWiV Moshe and Ivet discuss their finding that MIS-C after #COVID19 is a consequence of a superantigen in the spike protein of #SARSCoV2 that activates a skewed population of T cell receptor bearing lymphocytes, leading to hyperinflammation bit.ly/3BulY4R
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27 Jun 2021
via @NYTOpinion. Excellent read. My take home: an accident involving release of pandemic causing virus could have happened many places and we should investigate the origins of the current one thoroughly not to punish but to prevent nytimes.com/2021/06/25/opini…
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20 Apr 2021
Thanks to @nytimes, the Daily podcast @mikiebarb and @globaldan for this expose about the current wave of anti trans legislation podcasts.apple.com/us/podcas…
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