@JamesDManton profile picture
James Manton @JamesDManton

Applied physicist & optical microscopist/microscopologist

Joined September 2019
  • Tweets 1,547
  • Following 557
  • Followers 1,697
252 Photos and videos
An interesting alternative to iterative deconvolution — just sample from the posterior and average the samples!
Pressé Lab@LabPresse
5 Nov 2024
Check out our "Richardson-Lucy without Iteration Cutoffs: Physically Motivated Bayesian Deconvolution" 🔬 bandpass integrated in physics-based fashion to avoid overfitting thru SNR regimes. arxiv.org/abs/2411.00991 Fully parallelized code here: github.com/LabPresse/Bayesia…
4
829
James Manton retweeted
Jörgen Kornfeld@jmrko
4 Nov 2024
Interested in working on a state-of-the-art connectomics pipeline at its birthplace as a postdoc? We’d love to hear from you! :) mrc.tal.net/vx/mobile-0/appc…
4
9
1,602
James Manton retweeted
Joe Greener@jgreener64
4 Nov 2024
I have two job adverts open at the minute: - A PhD position on fast MLIPs for biomolecules (mrc-lmb.cam.ac.uk/students/i…) - A postdoc position on developing a universal molecular mechanics force field (nature.com/naturecareers/job…) Feel free to get in touch with questions.
25
49
11,257
James Manton retweeted
Nils Norlin@nilnorl
30 Oct 2024
Two available postdoc scholarships at Norlin Lab in Lund! 1. Optical Engineering: OPM/light-sheet microscopy and lensless imaging jobrxiv.org/job/lund-univers… 2. Flexible Position: Related to spatial-omics method development or LLMs for life science research. Email/DM if interested

Postdoctoral scholarhip in optical engineering for life science research

Post a job in 3min, or find thousands of job offers like this one at jobRxiv!

jobrxiv.org
3
7
1,355
A nice use of multispectral microscopy to study the organelle signatures of neurons and astrocytes in 2D t and 3D! I look forward to playing with the data they've generously made available at ebi.ac.uk/biostudies/BioImag….

BioStudies < The European Bioinformatics Institute < EMBL-EBI

BioStudies – one package for all the data supporting a study

ebi.ac.uk
Sarah Cohen@cohenlaboratory
31 Oct 2024
Preprint alert! Led by Shannon Rhoads, we used 🌈🔬 to elucidate the #organelle signatures of #neurons and #astrocytes at baseline and in response to neurodegenerative-disease associated stressors. See Shannon's awesome tweetorial below! biorxiv.org/content/10.1101/…
1
8
1,084
Following a poke from @RunningPhoton, I've fixed a bug in my KL divergence calculation function which means our parameter-free deconvolution approach now *really* has no hand-tuned parameters at all: beryl.mrc-lmb.cam.ac.uk/rlgc… Feedback always welcome. x.com/JamesDManton/status/18…

James Manton@JamesDManton
12 Aug 2024
We (@AndrewGYork, @RunningPhoton, @microRussell and I) are still working on the manuscript describing our automatic parameter-free deconvolution approach, but we've made a Google Colab notebook where you can try it out without needing to install anything: beryl.mrc-lmb.cam.ac.uk/rlgc…
0:11
3
7
23
3,125
James Manton retweeted
Dr Siân Culley@SuperResoluSian
26 Oct 2024
If you find these kind of incisive scientific discoveries - fluorescence microscopy is not cat photos - interesting then please come and work with me on the project! Details here, deadline 11 November -> kcl.ac.uk/jobs/097465-postdo…

Simon F. Nørrelykke@SimonFlyvbjerg
25 Oct 2024
Beware of applying computer-vision metrics to microscopy image of biological samples. At best, you fool only yourself. @SuperResoluSian #I2K2024 #BioImageAnalysis
19
48
11,622
For science, Jacob Lamb, Hugh Wilson and I had a fun morning using a focussed ion beam to image a @Thorlabs CS165MU/M camera. Here's the board loaded into the sample chamber... 1/8
2
1
14
1,631
more replies
We also see nice contrast with the tiny gold wires that connect the sensor chip to the main board. The ion beam showed good contrast over most of the board, which gives us confidence that it'll be a good tool for inspecting chips after some semi-destructive modification. 7/8
1
1
1
338
And if we try milling some flat glass, we see interesting undulations in the milled surface. If any of us ever form a band, we all thought this would make a good album cover. 8/8
3
311
James Manton retweeted
Suyang Zhang@Zhang_Suyang
17 Oct 2024
Our lab @MRC_LMB is seeking a passionate PhD student to explore transcription-coupled splicing! Join our team for an exciting project to understand human gene regulation 🧬 Feel free to get in touch directly #PhD #cryoEM #biochemistry
10
86
414
59,150
Thanks to @royalsociety and @MRC_LMB, @lab_baum and I are looking for a student to develop the next generation of fluorescent proteins for live and super-resolution imaging, as part of the LMB's four-year PhD programme. mrc-lmb.cam.ac.uk/students/i…

Careers & People | MRC Laboratory of Molecular Biology

Careers & People An unsurpassed environment for both new and established researchers. “Our scientists are drawn from all over the world, creating a live ...

mrclmb.ac.uk
This tweet is unavailable
1
16
18
5,363
Congratulations to @_Akaash_Kumar for being awarded the Royal Microscopical Society's Early Career Award for his PhD work on multispectral imaging! biorxiv.org/content/10.1101/… x.com/RoyalMicroSoc/status/1…

Multispectral live-cell imaging with uncompromised spatiotemporal resolution

Multispectral imaging is an established method to extend the number of colours usable in fluorescence imaging beyond the typical limit of three or four, but standard approaches are poorly suited to...

biorxiv.org
RMS
@RoyalMicroSoc
2 Oct 2024
Big congrats to Akaash Kumar @_Akaash_Kumar who emerged as our Early Career Award-winner! 👏👏👏🔬🔬🔬 A tough job for our judges after such a brilliant range of talks from our shortlisted speakers. #microscopy #EarlyCareer
2
3
22
1,694
Load more