Researcher @WeAreTUDublin with focus on #molecularbiology. Exploring the fascinating field of #microbiology.

Joined May 2021
5 Photos and videos
🚨 Call open! ICARS partner @CCAMP_India & UK Govt’s #GAMRIF launch the 2025 Programme for #AMR in the Environment 🌍 💰 Up to INR 2 Cr / £170K global ecosystem support 🔬 Solutions for AMR in soil, water & air 📅 Deadline: Sept 26, 2025 🔗 indiaamrgrandchallenges.ccam… #IAIH #IndiaFightsAMR @Taslimarif @PrinSciAdvGoI @PrinSciAdvOff
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Leonard Koolman retweeted
Out Now! Cell wall stress in bacteria increases a nucleotide second messenger to reduce turgor bit.ly/44rKcw8 #Bacteria #CyclicDiAMP #CellWall
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We’ll be hosting the Bioinformatics Summer Workshop from August 11–15. The workshop is completely free and held 100% online. If you are interested, please go ahead and register: sites.google.com/view/bioinf…
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Leonard Koolman retweeted
Out Now! Human gut bacteria bioaccumulate per- and polyfluoroalkyl substances bit.ly/3I6UUkl #Microbiology #PFAS #ForeverChemicals
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In this masterclass, discover how to analyse your Oxford Nanopore sequencing data, from setting up your sequencing run, basecalling, and performing quality control - to performing in-depth analysis with EPI2ME, with no prior bioinformatics experience necessary. nanoporetech.com/about/event…
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30 Apr 2025
Create plots like this in 2 minutes using DataMap, a small shinylive app that securely runs in your browser. App: gexijin.github.io/datamap/ Code: github.com/gexijin/datamap/ Preprint: arxiv.org/abs/2504.08875
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16 Apr 2025
Excited to launch DataMap – a portable, browser-based tool for generating heatmaps and PCA & tSNE plots. No installs. No servers. Your data never leaves your device. ✔️ Interactive heatmaps, PCA, and t-SNE ✔️ Transform & normalize data on the fly ✔️ Upload CSV, TSV, Excel annotations ✔️ Generate R code for reproducibility Ideal for visualizing high-dimensional data matrices, such as RNA-Seq data. It's a Shiny app deployed via shinylive and WebAssembly. Also available as an R package. Try it now: github.com/gexijin/datamap Source code: github.com/gexijin/datamap Preprint: arxiv.org/abs/2504.08875
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Interested in bacterial genomes? Hundreds of thousands, even millions? All annotated, taxonomically classified, integrated with metadata. Easily searchable, viewable, downloadable, in sync with #AllTheBacteria. Then BakRep is for you! Poster P-CM-102 @VAAM_Microbes #VAAM2025
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We're looking for motivated researchers to join our team in TU Dublin and apply for a MSCA-PF (Marie Sklodowska-Curie Actions Postdoctoral Fellowship). Apply here: All details can be found by scanning the QR Learn more about our project on EURAXESS: euraxess.ec.europa.eu/jobs/3…
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Do you know? Graphs 📊 for gene 🧬 ontology and KEGG pathways (like given below) are now super easy to draw, without any learning of complex codes. Through web-based environment and for free 🆓 Tutorial: youtu.be/IW-woSE9YNk #Bioinformatics #kegg #trancriptomics
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A free web-based tool, super helpful for creating a wide range of colorful illustrations. Link 🔗 chiplot.online/

An introduction to a web-based tool for free Bioinformatics plots | Chi Plot
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Exciting news! I’m launching the official website for Dr. Asif’s Molecular Biology—a hub for molecular biology tutorials, bioinformatics tips, and research insights. Stay tuned for the big reveal!
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Free #bioinformatics toolkit for #biologists! Master #Linux, basic scripting, and advanced Nextflow pipelines, with #OnlineCourses that guide you through bioinformatics workflows. Gain deeper insights from your research🚀 📎 bit.ly/4hG4ZRI #BioinformaticsForBeginners
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Antimicrobial resistance (AMR) puts the future of medicine at risk. Without effective antibiotics, surgeries & cancer treatments could fail. We must act now to protect these life-saving medicines for future generations. Get started with this kit today: bit.ly/3Q7HEwp
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A genomics learning framework for undergraduates journals.plos.org/plosone/ar… 🧬🖥️🧪
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31 Dec 2024
New year, new assemblies! I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes! It's the successor to Trycycler, designed to be faster and less reliant on user intervention. Check it out: github.com/rrwick/Autocycler… (1/5)
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An introduction to a web-based tool for free Bioinformatics plots | Chi Plot
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12 Dec 2024
Are you looking forward to 2025 as much as we are? 👀 We just updated our 2025 EMBL Annual Poster to include even more courses and conferences for you to join, so go and have a look! ➡️ s.embl.org/poster-x #EMBLEvents #molecularbiology #lifesciencetraining
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The Governing Body of TU Dublin has today announced the appointment of Dr. Deirdre Lillis as its next President. tudublin.ie/explore/news/tu-…
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