Joined February 2016
- Tweets 121
- Following 47
- Followers 855
- Likes 110
6 Photos and videos
OpenMS Team retweeted
24 Nov 2023
Our study on FDR estimation bias in top down proteomics (TDP) proteoform ID is published in Proteomics! Errors in precursor mass determination is frequent in TDP and the false proteoform IDs from them are not well controlled via target decoy!
analyticalsciencejournals.on…. .
1
4
23
2,991
OpenMS Team retweeted
14 Nov 2023
And as the name implies, it is very fast!! If you want to check the accurate proteoform abundance in no time, e.g., for your large scale studies, FLASHQuant should be your choice!
1
3
392
OpenMS Team retweeted
14 Nov 2023
FLASHQuant reports the area of the LC-MS features corresponding to each monoisotopic mass, i.e., each proteoform mass. It also disentangles the shared features between different proteoforms, using shape fitting and signal decomposition.
1
2
5
405
OpenMS Team retweeted
14 Nov 2023
Preprint alert!! Our new MS1-level label-free quantification tool for top-down proteomics FLASHQuant is presented in BioRxiv!! As a part of OpenMS @OpenMSTeam, FLASHQuant is freely available and open source! Check out: biorxiv.org/content/10.1101/…
1
7
33
3,820
21 Jul 2023
Folks! We have created a survey to better understand users' experience with OpenMS. The survey is short, and we would love to hear your opinions on what's good and bad! Please share your thoughts
surveymonkey.de/r/9F6TMJL
#proteomics #metabolomics #lipidomics #TeamMassSpec #PhD
10
9
2,328
OpenMS Team retweeted
22 Mar 2023
Recent version 1.1.0 of quantms is now out. You can now perform DIA using DIA-NN, DDA-TMT, DDA-LFQ, and Phospho localization analysis. Everything is based on standard file formats including mzML, SDRF, mzTab. Great collaboration with @DemichevLab @OpenMSTeam @nf_core teams.
Pipeline release! nf-core/quantms v1.1.0 (Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.)
See the changelog: github.com/nf-core/quantms/r…
2
12
22
4,174
3 Mar 2023
If we were to do a one-hour online 'seminar'/Q&A focusing on complex workflows in OpenMS, what tools would you like us to discuss? 👀
#MassSpec #TeamMassSpec #proteomics #metabolomics
1
2
642
20 Feb 2023
Samuel Wein just published a detailed step-by-step protocol on how to analyze #RNA sequences and modifications using NucleicAcidSearchEngine! Check it out! Congrats Sam! 😄
link.springer.com/protocol/1…
#MassSpectrometry #TeamMassSpec #MassSpec #Epitranscriptomics #transcriptome
6
10
1,419
23 Nov 2022
Worried about not having data to show at the next group meeting? Make interactive plots to distract/impress!😆PyOpenMS lets you interface with python packages to make interactive MS data. Here, we used it to zoom on an ion mobility trace
#TeamMassSpec
Doc: pyopenms.readthedocs.io/en/l…
2
9
49
OpenMS Team retweeted
3 May 2022
Massive collaboration with @OpenMSTeam and @DemichevLab to allow Quantitative MS-based data analysis distributed and in the cloud. quantms allows analyzing DDA-LFQ, DIA-LFQ, DDA-ISO (TMT) proteomics data.
Pipeline release! nf-core/quantms v1.0 (Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.)
See the changelog: github.com/nf-core/quantms/r…
2
12
33
OpenMS Team retweeted
22 Apr 2022
We are excited to announce our summer 2022 fellowship!! Great opportunity for grad students with #MassSpec background to receive training in #CompMS. The application deadline is May 6.
#AcademicTwitter #opensource #proteomics #Metabolomics #Lipidomics #TeamMassSpec
3
65
107
19 Apr 2022
We are looking for additional technical writers for our Google Season of Docs 2022 proposal! Great opportunity for students to get involved in computational #MassSpec! Reach out to us on Gitter/Discord for questions!
#GSoD #opensource #WriteTheDocs
github.com/OpenMS/OpenMS/wik…
5
7
OpenMS Team retweeted
Join us at #ISMB2022 #CompMS to learn about the latest advances in computational mass spectrometry. iscb.org/ismb2022
Keynote speakers: @Ge_Lab_UW, @briansearle, @Smith_Chem_Wisc, @gjpattij.
Abstract submission deadline: April 21, 2022 !
iscb.org/ismb2022-submission…
18
44
It really is free and less than 2 weeks away. Register now for the EuPA and EPIC-XS workshop and webinar on Computational Proteomics compomics.com/events/2022-ep…
15
39
OpenMS Team retweeted
As part of the @iscb ISCBacademy series hosted by #CompMS, @Yue_Qin_SysBio and @leah_v_schaffer will present their work on integrating protein images and interactions.
Join us on Tue March 29 at 11:00AM ET to hear about this exciting research! iscb.org/iscbacademy
1
6
16
11 Mar 2022
We are participating in Google Summer of Code 2022! We have 5 proposed projects to choose from. This is a great opportunity for you to gain knowledge about the field of bioinformatics/computational mass spectrometry! open-bio.org/events/gsoc/gso…
#GSOC #GSoC2022 #MassSpec #opensource
4
5
OpenMS Team retweeted
28 Feb 2022
Next @denbiOffice #Bioinformatics #training course: @OpenMSTeam Developer meeting #proteomics #metabolics. For more information see: denbi.de/training/1376-openm…
1
3
4
OpenMS Team retweeted
3 Mar 2022
I made this figure out of my fascination with protein architectures. I call it "Molecular Machinery of Life." Thought to share it with you to enjoy your eyes. Can you detect, by heart, the Nobel Prize-Winning structures? @AcademicChatter #AcademicTwitter
35
278
1,502