Joined September 2019
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Congrats @MariusLange8 @PhilippWeiler7 and team @fabian_theis @dana_peer !!! It’s a fantastic tool!
🥳Proud to be part of the team that developed CellRank 2, which just won the first Helmholtz software award: hifis.net/news/2024/07/18/sw… @PhilippWeiler7 Michal Klein @fabian_theis @dana_peer ⌨️Learn more about the software and how you can use it here: cellrank.org
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Treutlein lab retweeted
My group will be open to host PhD students & rotations for the upcoming @biozentrum Fellowship call We use theoretical physics to understand complex biological systems, from chromosomes to embryos Interested? Check our research & get in touch➡️davidbrueckner.de/research Please RT

Apply now for the prestigious and independent #BiozentrumPhDFellowships. Great science. Unique rotation-based selection of research group and other incentives. The winter call is open until October 5, 2024. bit.ly/4caiqqX @biozentrum @UniBasel_en
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Treutlein lab retweeted
#JobAlert Our Department is seeking a scientific expert APTT in engineering bimolecular systems with a translation focus on paediatric health > u.ethz.ch/V3zGa @ETH_en Applications are due 31 August 2024. Thanks for sharing!
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How do cells with the same genetic material differentiate into diverse cell types during early development? In a study @NatureNeuro led by @TreutleinLab and colleagues @IHB_Research scientists explore the role of histones in gene expression >u.ethz.ch/KliLL @epflSV
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Very exciting to see our single-cell epigenomic atlas of human neural organoids published in @NatureNeuro !!! Fantastic work, Fides Zenk @EpiGN_lab, Jonas Fleck @josch_f and the whole team !!! @ETH_BSSE @IHB_Research
27 Jun 2024
🚀Super happy that our latest research has finally been published in @NatureNeuro! We delve into the world of human neural development. Our findings shed light on the dynamic epigenetic changes that guide cell fate from pluripotency to fully differentiated neural cells.🧠🔬🧵
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26 Jun 2024
After trying for a year we finally managed to get @krkoehler as our 2nd keynote speaker for @Bacell3D 2024. Inner ear and skin organoids! Beautiful and inspiring conclusion to the meeting with a historical perspective, applications of the systems, limitations and vision outlook!
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24 Jun 2024
Last vision talk is from @TreutleinLab presenting on human oranomics: what’s next? And where the merger of single-cell, spatial genomics and #organoid technologies merge! @ETH_BSSE @BaCell3D
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Congrats @j_treutlein!!!
New paper, surprising result: We finetune an LLM on just (x,y) pairs from an unknown function f. Remarkably, the LLM can: a) Define f in code b) Invert f c) Compose f —without in-context examples or chain-of-thought. So reasoning occurs non-transparently in weights/activations!
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19 Jun 2024
Almost time for the #BaCell3D 2024! 🔔 #organoids #basel
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Meet Gisbert Schneider who becomes faculty member at D-BSSE | As of 1 June, @ETH_en professor and Biochemist/Bioinformatician Gisbert Schneider, is affiliated with D-BSSE. Gisbert is heading the Computer-Assisted Drug Design group > u.ethz.ch/WFGQK
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Treutlein lab retweeted
Very happy to share that CellRank 2 is out in Nature Methods today; this was a fantastic joint effort co-lead between @PhilippWeiler7 and myself, in collaboration with @dana_peer and with strong coding support by Michal Klein (github.com/michalk8).
Happy that CellRank2 is out @naturemethods! @PhilippWeiler7 & @MariusLange8 led this multimodal extension of CellRank, to allow study of cellular fate via multiview single-cell data of millions of cells in unified fashion. Text nature.com/articles/s41592-0… code github.com/theislab/cellrank
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17 May 2024
Yesterday's opening of ETH Zurich's new teaching and research building was a unifying event and showed that ETH Zurich plays an important role on the Schällemätteli Life Science Campus in Basel. @ETH_BSSE, @m_hengartner, @TorstenSchwede, @panke_sven, @atici_ch, @WolfrumLab
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A very warm welcome at @ETH_BSSE Prisca @priscaliberali !!!! So excited to have you as a colleague!!! 🤩 Also fantastic to have this bridge to @FMIscience !!
An amazing period for the lab! I would like to thank the @FMIscience and @ETH_BSSE for all the support. I am looking forward to join new colleagues and increase the collaborative environment in Basel that is an incredible scientific hub @IHB_Research @biozentrum @NovartisScience
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A very warm welcome to the D-BSSE, @priscaliberali !
We're excited to announce that starting June 2024, @priscaliberali will hold dual positions as a Senior Group Leader at the FMI and Professor of Multicellular Systems at @ETH_BSSE in Basel. Congratulations on this well-deserved recognition, Prisca! fmi.ch/news-events/articles/…
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Huge congratulations @AshleyMaynard10!!! 👏🍾This is extremely well deserved, so happy for you!!! 🤩It has been a great pleasure and fun to work with you on your excellent PhD projects!!!
Thank you @ETH_en & @ETH_BSSE for this incredible honor! I am deeply grateful to @TreutleinLab for their support and collaboration🙏. Proud to receive the #ETHmedal and excited to continue exploring the molecular landscape of neurogenesis and regeneration🧐!
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Don't miss this unique celebration of Single Cell Genomics science at an amazing location!!!
Single cell enthusiasts, get your flip-flops ready! Less than 24 hours until the registration to SCG2024 in Corinthia, Greece opens (April 3rd 3PM EU time) conferences.weizmann.ac.il/S…  Space is limited, don’t miss your spot!
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Exciting work on a highly multiplexed single-cell transcriptomic morphogen screen to understand the role of morphogens- their concentration, timing and combinations -on human brain organoid patterning! Congrats @fatima_snc and the whole team!!!
Thrilled to share my PhD work in the @TreutleinLab & @GrayCampLab! In this 🚨preprint🚨, we present an integrated perspective on how morphogens impact early human neural organoid development: biorxiv.org/content/10.1101/… Tweetorial landing in 3, 2, 1...
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Fantastic news! Congrats Elly @Tanaxolotl !
Elly Tanaka will be IMBA’s new Scientific Director, heading the institute from April 2024 onwards. Elly Tanaka is a renowned researcher, who studies the regeneration of complex body parts. Welcome, Elly!
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