Joined May 2010
704 Photos and videos
"Using AI agents to navigate biological data infrastructure is like driving through an old city that was designed before cars: the infrastructure may be beautiful and even thoughtful, but it’s full of narrow, winding streets" Is Biology the Europe of agents?
New Science Blog: Why has AI advanced faster in coding than in biology? To agents, bio databases are like cities built before cars—maddening to drive in because they're designed for different traffic. How do we build infrastructure agents can use? anthropic.com/research/agent…
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David Mas-Ponte retweeted
My 10-year plan
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i have something (relatively) similar in my obsidian vault, using EuropePMC API, works really well and super reliable
We vibecoded a Slack app that detects bioRxiv and medRxiv links posted to our lab's #papers channel, and auto-posts the title authors abstract for easy previewing Posting the Github repo here - Free to install/deploy in case anyone else finds it useful github.com/rsatija/biorxiv_p…
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😅😅😅
3 Nov 2025
Tie, who has called herself Biotech Barbie, focuses her entrepreneurial ambitions on a controversial goal: altering the genome of human embryos to prevent genetic disorders go.nature.com/4oiHPV3
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Funny to see this within historical context, post dictatorship Spain joined NATO with heavy criticism from the socialists (now in power) They then later won the elections and switched sides to support NATO They still had the common decency to throw a referendum that barely passed
10 Oct 2025
Trump suggests kicking Spain out of NATO as a “laggard” — Finnish president left speechless During a meeting with Finnish President Alexander Stubb, Donald Trump said that Spain should be “kicked out of NATO” because it’s “falling behind on defense payments.” “Maybe you should just throw them out of NATO, frankly!” Trump said, adding that Madrid isn’t meeting the demand to spend 5% of its GDP on defense. Stubb was left staring in silence, not knowing how to respond 😅
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With the traditional vote patterns of Catalunya and Basque Country already showing up.
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Both Mary Brunkow and Fred Ramsdell were at Celltech's laboratories in Seattle when they published the paper. Interestingly, Celltech was originally founded primarly by the UK goverment and eventually sold to a Belgian biotech (lol) en.wikipedia.org/wiki/Cellte…
6 Oct 2025
Congratulations to Mary Brunkow, Fred Ramsdell and Shimon Sakaguchi for this year's Nobel Prize in Physiology or Medicine. It also demonstrates the fairness of the prize, as Mary Brunkow is a Senior Program Manager (not a professor) at the @isbsci. hood.isbscience.org/people/m…
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like the idea of "knowledge tiers" invention ➡️ engineering ➡️ scaling
13 Sep 2025
Was great to chat about virtual cells and @arcinstitute with @JorgeCondeBio and @eriktorenberg on the @a16z pod. More next week!
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not sure what's more unexpected, notion offline or the EU hoodie 😅
19 Aug 2025
So for 5 years, “offline” has been the #1 request. Today, thanks to the perseverance of our engineering team, @NotionHQ finally works offline. Your ideas don’t need Wi‑Fi to exist! For Notion community: thank you for your patience while we built this right. This is a journey, I want to share what we had to invent to make this real... 1/n
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David Mas-Ponte retweeted
16 Jul 2025
Escritor después de haber firmado 2000 libros y sentarse en su propio libro. #Celsius232 / #celsius2025
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David Mas-Ponte retweeted
📄 In this work, we try to bridge two parallel research areas: the well-established literature on agent-based modeling in biological systems and recent advances in learning update rules in CA from data with autodifferentiation. arxiv.org/abs/2506.20486
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Someone saw this and thought, "this is such a cool and not cringe at all announcement, let's publish it!" scary world we live in 🥲
After four and a half years of building, I’m beyond excited to announce today family planning via genetic matching on @nucleusgenomics. Imagine knowing nearly every possible genetic outcome for you and your partner’s future children, starting with your future children’s risk of inheriting over 900 diseases. In the future, all couples everywhere will check their genetic compatibility before having children. In doing so, couples can choose not to pass down hereditary disease to their kids. This is what modern genomic science is about — building tools that lets anyone, anywhere be healthy and have healthy children. What better way to announce genetic matching than syncing with @MollySOShea? Watch to find out if we’re compatible😉
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Is there any community "AlphaFold Server" that can be self-hosted? Any in the making?
11 Nov 2024
For #AI prediction of protein structure, now there's Massive Fold to save cost and time nature.com/articles/s43588-0… @NatComputSci @GBrysbaert and #AlphaFold3 just went open-source nature.com/articles/d41586-0… @Nature @ewencallaway
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3 Nov 2024
Crits, insults i llançament de fang contra el rei, Mazón i el govern a Paiporta bit.ly/3UBFqIu #DanaPaísValencià3Cat
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most names are actually quite random though. e.g. TP53, named after something like "tumor protein with 53 kDa". My favorite trivia is that the actual molecular mass is not 53 but 44, just runs as heavier because of how many prolines it has.
A central mistake in biology was to name genes. This over-simplification made reconciling what is happening on the molecular level a mess - it's not rare to find reports of opposite mechanisms in different contexts, claimed involvement in dozens if not hundreds of different processes, sometimes inhibiting and sometimes amplifying and most of the time being oblivious to the potential for sequence-level variation. Nobody would be surprised about this diversity of findings if we instead recognized genes as (sometimes quite lengthy and complex) pieces of sequence that carry state and interact with and are interpreted by their environment - often producing dozens of gene products that are in turn themselves context-dependent and modulated. Naturally, such a highly amorphous composition of objects has many diverse effects, and masking this complexity behind a single name more often than not ends up being a harmful abstraction. The primary role of gene names then is to give us the false appearance of comfort in the face of enormous biological complexity. One under-appreciated potential of the emergence of AI tools in biology is to undo this mistake, and - instead of assuming it away - extend our ability to lean further into this complexity.
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interesting example, wondering how many RLN-like evolution events could we see at the molecular level where "design" and "optimal solutions" are harder to interpret
My meager education in biology and evolution gave me the mistaken impression that evolution optimized everything. But it didn't. One example is the recurrent laryngeal nerve (RLN). It goes from behind your ear, loops down below your aorta, and then back up to the voice-box 1/2
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David Mas-Ponte retweeted
Is that how living in the EU will feel in the Age of AI? 🤔 @AIatMeta's new multimodal Llama, @Apple Intelligence, or @OpenAI's Advanced Voice Mode of ChatGPT are all currently restricted in the EU. There's a growing concern that this could lead to "two-speed AI" - more advanced AI for the rest of the world and less capable AI for the EU. While regulations aim to protect, they can also hinder innovation—we need to quickly find a balance to ensure progress isn't stalled. 🇪🇺
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TIL that a spain (still under franco) "forced" a re-unification referendum to Gibraltar in 1967 and only 2 people voted in favor of joining back
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video de @MorningBrew sobre el DATA VALLEY a Ashburn, Virginia Punts clau, access a electricitat barata i sostenible, proximitat a una metropoli pero amb terreny rural, barat i protegit de calamitats meteorologiques etc. youtu.be/xHuoWV3Jwik?si=kfEr…

poca broma amb Bon Area, un datacenter a guissona amb plaques solars i tota la pesca
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