We’re a group of scientists that investigate on ecological and evolutionary aspects of the microbial communities associated with pathogens and hosts @INRA_Intl

Joined October 2015
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Shifting the paradigm from pathogens to pathobiome: new concepts in the light of meta-omics frontiersin.org/articles/10.…

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I'm thinking about proposing a computational/data science workshop for next year's #asmmicrobe in Chicago. What (skills) would you like to learn? or wish you had learned sooner?
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Philosophy & science day tweet 1: What is An Organism? An Immunological Answer (by Thomas @pradeu ) jstor.org/stable/23335074?se…

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What is there in acorns? A lot of #fungi! Our new preprint showing maternal effects in #seed #microbiome of oak trees is online biorxiv.org/cgi/content/shor… @TaniaFort1 @SDelzon @AmyZanne @charlie_pvrt @Ubiogeco @IRHS_Seed_lab
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This week marks the end of an era for me. In 2014 @joshdneufeld welcomed me into his microbial ecology lab for an undergraduate coop. Since then this delinquent duo published five papers together- here's the final one: microbiomejournal.biomedcent…
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Good to know: Triplicate PCR reactions for 16S rRNA gene amplicon sequencing are unnecessary | BioTechniques future-science.com/doi/full/…

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After Integrative Human Microbiome Project, what’s next for the #microbiome community? Latest phase of this project has provided many insights into disease. But multidisciplinary collaborations now needed to convert knowledge into clinical applications. nature.com/articles/d41586-0…
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. #Microbes : 15e édition du congrès national de la Société Française de #Microbiologie (SFM), du 30 septembre au 2 octobre 2019, Paris. alphavisa.com/sfm/2019/fr/
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Microbial networks inferred from metabarcoding data lack replicability: consequences for next-generation biomonitoring dlvr.it/R53Md1

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The pros, cons, and many unknowns of probiotics nature.com/articles/s41591-0…
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Announced at #Holobiont2, #Holobiont3 will take place in Lyon along with the ⁦@IntlSymbioSoc⁩ 10th meeting! See you all there for what will be a memorable conference.
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Microbial “gardening” by a seaweed #holobiont: Surface metabolites attract protective and deter pathogenic epibacterial settlement besjournals.onlinelibrary.wi…

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Sujet de thèse à l'ED227 sur l'Adaptation du microbiote intestinal aux changements de mode de vie des populations humaines. Si vous voulez bien le diffuser à vos étudiants. apps.mnhn.fr/DepotSujetThese… Fin des candidatures le 03/06/2019 !

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La métagénomique est l’étude de l’ensemble des génomes d’un écosystème donné. Elle permet de mieux comprendre les relations entre les différentes populations microbiennes #laMethSci
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High-throughput isolation and culture of human gut bacteria with droplet microfluidics biorxiv.org/cgi/content/shor… #bioRxiv

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Quorum sensing between bacterial species on the skin protects against epidermal injury in atopic dermatitis @ScienceTM stm.sciencemag.org/content/1…
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WOW! I just stumbled across a paper that used my #metagenomics tools list (now at my blog buff.ly/2DSYHOk) for large metaanalysis /benchmarking. COOL! Thanks @ppgardne the acknowledgement! Happy all that work was put to good use! 😉👍🦠🧬 @thePeerJ buff.ly/2DXQng5
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