CME INDIA Clinical Pearls
Encephalitis 2026: Infectious vs Autoimmune Brain Inflammation — “Treat Early, Test Smart, Avoid Misdiagnosis”
1. Encephalitis is a neurological emergency, not a diagnostic curiosity. Any patient with fever, altered sensorium, seizures, new psychiatric symptoms, focal deficits, movement disorder, or rapidly evolving cognitive decline should be approached as possible encephalitis until proven otherwise. The Lancet Seminar emphasises encephalitis as a global emergency with substantial preventable morbidity and mortality.
2. First clinical split: infectious encephalitis vs autoimmune encephalitis. Infectious encephalitis often has fever, acute onset, CSF pleocytosis, and viral prodrome; autoimmune encephalitis may present with psychiatric symptoms, seizures, memory loss, dyskinesias, autonomic instability, or faciobrachial dystonic seizures. But overlap is common, so clinical impression must be supported by CSF, PCR, MRI, EEG, and antibody testing.
3. Do not wait for PCR before starting acyclovir when HSV encephalitis is possible. HSV encephalitis remains the “must-not-miss” treatable viral encephalitis. Early IV acyclovir improves outcome, and delay increases neurological disability and death. UK viral encephalitis guidance recommends IV aciclovir for proven HSV encephalitis for 14–21 days with repeat CSF HSV PCR at the end of therapy.
4. Temporal lobe signal on MRI is HSV until proven otherwise. Fever, seizures, behavioural change, aphasia, or memory disturbance with medial temporal/frontal involvement should trigger immediate acyclovir. A normal early CT does not exclude encephalitis; MRI is the imaging modality of choice when available.
5. CSF is the diagnostic backbone. Send opening pressure, cells, protein, glucose, Gram stain/culture, HSV/VZV/enterovirus PCR as locally relevant, and paired serum/CSF autoimmune antibody panels. CSF antibody testing is especially important for NMDAR-antibody encephalitis; serum-only low-titre antibodies can mislead.
6. EEG helps when the patient “looks psychiatric” but the brain is inflamed. Diffuse slowing supports encephalopathy; epileptiform activity or non-convulsive status epilepticus may explain persistent altered sensorium. EEG is particularly useful when seizures are subtle or when MRI is initially normal.
7. Autoimmune encephalitis is treatable, but overdiagnosis is dangerous. The Lancet Seminar specifically warns about frequent misdiagnosis of autoimmune encephalitis. Do not label autoimmune encephalitis solely because of psychiatric symptoms or a weakly positive serum antibody; require a compatible syndrome, objective CNS inflammation, and exclusion of mimics.
8. Recognise classic autoimmune patterns. Anti-NMDAR encephalitis often presents with psychiatric symptoms, seizures, dyskinesias, speech disturbance, autonomic instability, and reduced consciousness. LGI1 encephalitis often presents in older adults with faciobrachial dystonic seizures, memory impairment, hyponatraemia, and medial temporal MRI changes. CASPR2 may associate with Morvan syndrome, neuropathic pain, insomnia, dysautonomia, and thymoma.
9. Start immunotherapy early when autoimmune encephalitis is probable, but not blindly. Once infection is reasonably covered or excluded, first-line treatment usually includes high-dose corticosteroids, IVIG, or plasma exchange. Rituximab, cyclophosphamide, or other targeted approaches may be needed in refractory disease, ideally with neurology input.
10. In India, do not forget region-specific infectious causes. Japanese encephalitis, dengue, scrub typhus, tuberculosis, malaria, leptospirosis, chikungunya, rabies, Nipah in relevant geography, and post-infectious immune encephalitis should remain in the differential. Travel, season, vaccination history, animal exposure, mosquito exposure, and local outbreaks matter.
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