30 Mar 2025
#fNIRS #neuroimaging researchers, I would like to invite you to participate a quick survey to help us rollout a scalable free data sharing portal at NeuroJSON.io
neurojson.org/wiki/index.cgi…
single-page, 10 questions, only a few min of your time
@NeuroJSON
Thanks 🙏🙏🙏
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16 Feb 2025
Hotpot night 🍲 🥘 new group photo 📸 👪, we welcome our two new lab members, Hari - our in-house programmer, and Rose (Yiyi) Liu - our new PhD student.
We are building a great team for further advancing our @NeuroJSON and #MCX_MMC projects, among other new adventures.
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15 Feb 2025
Just to let everyone know, you can find me on 🦋🦋🦋@bluesky at
bsky.app/profile/fanglab.org
@NeuroJSON is also on bluesky at
bsky.app/profile/neurojson.i…
will crosspost new tweets, follow if you like
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15 Sep 2024
Stop by my student Ivy Yen's poster, #071, today at @fNIRS2024 #fNIRS2024, she will show you our latest #LLM driven #neuroimaging data query and pipeline automation tool at NeuroJSON.io @NeuroJSON
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2 Jun 2024
We have just closed the in-person registration in order to start finalizing the the logistics for the upcoming #MCX/@NeuroJSON workshops
the remote-only registration is still on, and I will leave it open until June 15
mcx.space/register/workshop/…
24 May 2024
🙌Congrats to following students for receiving our travel awards for #MCX/@NeuroJSON workshops
-Ernesto Pini, U. of Florence, Italy
-Laura Quintana Quinana,U. Las Palmas de Gran Canaria, Spain
-Daniela Leizaola,FIU,US
-Otavio Perez Palamoni, IFSC,Brasil
-Navid Ibtehaj Nizam,RPI
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24 May 2024
🙌Congrats to following students for receiving our travel awards for #MCX/@NeuroJSON workshops
-Ernesto Pini, U. of Florence, Italy
-Laura Quintana Quinana,U. Las Palmas de Gran Canaria, Spain
-Daniela Leizaola,FIU,US
-Otavio Perez Palamoni, IFSC,Brasil
-Navid Ibtehaj Nizam,RPI
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14 May 2024
I have got multiple requests on allowing remote participation for our upcoming #MCX_MMC and @NeuroJSON training workshops
Happy to announce that we plan to stream our training workshops for remote participants
Please register for joining us remotely:
mcx.space/register/workshop/…
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28 Apr 2024
Here are the 5 guiding principles of @NeuroJSON:
1.Open-data MUST BE provided in "source-code" format
2.Open-data MUST BE human-understandable
3.Diverse data formats do harm to #openscience and #opendata
4. Small is beautiful
5. Metadata is your data
neurojson.org/wiki/index.cgi…
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25 Apr 2024
Please note that the workshop dates has changed -
New dates:
June 29-30 for MCX workshop
July 1-2 for NeuroJSON workshop/hackathon
please register with this link
mcx.space/register/workshop/…
10 Apr 2024
#MCX_MMC in-personal workshop is back!
Our 5th MCX training workshop will be held on Jun 23-26 in @Northeastern ISEC, joint with the 1st @NeuroJSON workshop/hackathon
Seats limited; please register ASAP. Competitive travel grant available to students.
mcx.space/register/workshop/…
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25 Apr 2024
Important update: the date of the workshop has changed due to conflict with a conference.
New date: June 29-30 for MCX workshop, and July 1-2 for @NeuroJSON workshop/hackathon
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10 Apr 2024
#MCX_MMC in-personal workshop is back!
Our 5th MCX training workshop will be held on Jun 23-26 in @Northeastern ISEC, joint with the 1st @NeuroJSON workshop/hackathon
Seats limited; please register ASAP. Competitive travel grant available to students.
mcx.space/register/workshop/…
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5 Apr 2024
A particular focus of @NeuroJSON is the extraction, indexing and search of metadata - we run metadata-distillation in multiple tiers - from separating searchable/binary data in the dataset->JSON conversion, to CouchDB _design doc indices, to metadata search, or latest AI summary
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5 Apr 2024
@NeuroJSON neurojson.io portal is built upon #opensource @CouchDB server, supporting all CouchDB REST APIs. that means you can query,select,index and download/upload all JSON-encoded scientific data with just a URL (@MATLAB: webread/webwrite, #Python urllib.request)
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5 Apr 2024
Here is the full poster that I will be presenting on Apr 7 on our @NeuroJSON data portal neurojson.io
it has 1000 @BIDSstandard datasets in a @CouchDB server, >42000 subjects. Love to talk to you about sharing your datatsets. Currently #fnirs data is hand handful.
4 Apr 2024
3:30 PM - 3:30 PM
JS4A.34. NeuroJSON.io — a community portal for sharing neuroimaging and biophotonics public datasets
this is my poster - been heavily working on this myself over the last 6 months, lots of updates - I will start a new thread to provide more details
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28 Mar 2024
#JSONLab 3.0β is finally here🎉
first big release since funded by @NeuroJSON U24
👍supports #JSON-mmap for disk-map like fast read/write of JSON/binary JSON files
👍supports #JSONPath
👍dynamic download/cache linked data
👍@blosc2 compressor support
⚡️
github.com/fangq/jsonlab/rel…
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22 Mar 2024
@MeryemAYucel & @avolu_neurotech, I am wondering if you have BIDS version of your #OpenfNIRS datasets?
I also uploaded those to NeuroJSON.io, w/ @BoasDavid's blessing
neurojson.org/db/openfnirs
but they are not in @BIDSstandard, my metadata extractor does not work well
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22 Mar 2024
Once a dataset is converted to JSON and uploaded to our @CouchDB server on NeuroJSOn.io, we further extract (automated) dataset-level & subject-level metadata, and make those searchable
for example, we can search "Yucel" and find this dataset
neurojson.org/Search#query=e…
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12 Mar 2024
interested in extending to 3D graphics objects?
I have a #JMesh spec defined discrete shapes using pure JSON annotations
github.com/NeuroJSON/jmesh/b…
en.wikipedia.org/wiki/JMesh
we have also incorporated #JMesh format in our neuroimaging data portal @NeuroJSON
neurojson.org/db/brainmeshli…$
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12 Mar 2024
If you haven't had chance to fill out this @NeuroJSON community survey, I am very much appreciated if you can fill out this 1-page google form using the below link
neurojson.org/survey/2024-1
for those who had submitted your feedback, thank you so much! 🙏🙏🙏
3 Mar 2024
I'd like to invite folks doing research in #neuroimaging,#fnirs,#biophotonics and #datascience to participate our first @NeuroJSON community survey
neurojson.org/survey/2024-1
@oostenvr @fNIRS_org @BIDSstandard @GuiomarNiso
@furranko @yarikoptic @ReproNim @NeuroFedora @andreashorn_
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