Jan 23
【想定問答集】
1．個体数減少ってだいぶ雑じゃね？
A. その通りです。実はこのRADseq解析は予備実験だったんですが、平行して全ゲノム解析（WGS）も始めてて、やっぱりWGSの方が良いデータ出てくるので、RADseqの本解析には進まずにこの段階で論文化しちゃいました。広域的WGSもやってます。
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29 Jul 2025
I missed this paper when in came out in 2018, as we had long ago moved away from any flavor of RADSeq to low coverage WGS. besjournals.onlinelibrary.wi… I found this part of the abstract both funny and true, but all too common. Minor change, name change! new pub!
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🧬🌱 ¿Genes por ensamblar y variantes por descubrir?
¡Lanzamos 2 cursos bioinformáticos!
🔍 Genomas de #plantas | 22–26 sept
🌿 RADSeq en silvestres | 29 sept–3 oct
💻 Teoría práctica supercomputación
📍Presencial SCAYLE
🔗 scayle.es/cursos/
#bioinformática #genómica
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31 May 2025
➡️ 14/15 June: pre-conference workshop on RADseq data (TC16)
➡️ 17 June 12:45: meet the board of the SCB ConsGen WG during an informal business meeting, all are welcome!
➡️ 18 June 14:00 session: Applying Genomics to Biodiversity Conservation
Come find me!
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25 May 2025
➡️A few more days to sign up⬅️
For all who would like to learn about conservation genomics and RADseq (no previous experience required).
Deadline 1st of June, but we only have a few more spots left!
conbio.org/mini-sites/iccb-2…
4 May 2025
RADCamp Australia edition! We'll be organizing a hands-on training course in handling RADseq data, as a pre-conference workshop at ICCB in Brisbane. If you're interested in genomics, specifically with a connection to conservation, consider signing up! 🧬💻🇦🇺
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4 May 2025
RADCamp Australia edition! We'll be organizing a hands-on training course in handling RADseq data, as a pre-conference workshop at ICCB in Brisbane. If you're interested in genomics, specifically with a connection to conservation, consider signing up! 🧬💻🇦🇺
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7 Apr 2025
Resolving Phylogenetic Relationships Within the Trichophyton mentagrophytes Complex: A RADseq Genomic Approach Challenges Status of ‘Terbinafine-Resistant’ Trichophyton indotineae as Distinct Species onlinelibrary.wiley.com/doi/…
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20 Nov 2024
New in ME by @josephine_paris, @dr_andyking, @patbhamilton, @jcatchen, & @Fish_Genomics.
RADseq & RNAseq reveal the basis of metal tolerance in brown trout living in polluted rivers.
@WileyEcolEvol @UniofExeterNews @ExeterEvo @ExeterMarine
📷 @DanielOsmond
buff.ly/3Og5cyk
ALT Picture of a brown trout.
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19 Nov 2024
New in Molecular Ecology by @josephine_paris. RADseq & RNAseq reveal the basis of metal tolerance in brown trout living in polluted rivers.
@WileyEcolEvol @UniofExeterNews @ExeterEvo @ExeterMarine
buff.ly/3Og5cyk
doi.org/10.1111/mec.17591
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9 Nov 2024
RADseqやMIGseqのコスパは、サンガーと比べても良いから集団解析する分には良いんだけど、系統離れた種間で共通配列をあまり得られないので、分類体系の構築に向いたツールではないと思う
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16 Sep 2024
Finally, RADseq on full sibs of these F2s, full sibs of B. stricta x B. retro crosses, and wild-collected hybrids (within species and betw) shows some cool stuff. First, yes, PCA results are consistent with wild-collected hybrids being exactly who we think they are (phew!) 6/
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18 Jul 2024
Happy to release Stacks v2.67 today. This release updates process_radtags to make it easier to use SRA data and to filter poly-G (error) runs coming from Nextseq/Novaseq machines bugfixes. We also added a genotype depth filter to populations #RADseq
catchenlab.life.illinois.edu…
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27 Jun 2024
Thanks @Bird_Sock for the piece. And most importantly, thanks to @kmlong7 for leading the paper, for being a great collaborator, and for letting me play with some sweet bird RADseq data!
Awesome article (and photos of manakins!) just released today, written by @Bird_Sock on my recent paper with @arcolon14, @KevinFPBennett, @jcatchen, Jeff Brawn and Mike Braun in @journal_evo
Check it out: buff.ly/3L3sar0
#ornithology #manakin #TeamManacus
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26 Jun 2024
SSRは全体比で高いイメージがあり、それに伴って周囲も同様の傾向である気がしました。
またRADseqのデータにPSMC適用した例では、ゲノムのカバー率が10%程度必要で、突然変異率、組み替え率も結果に影響するとの事なのでMIGseqへの適用はより厳しい戦いになる気がしました。
onlinelibrary.wiley.com/doi/…
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12 Jun 2024
🚨 Ready to master #RADseq data analysis uisng #Stacks? Join our course led by the amazing @naiara_re, @TerezaManousaki, and @NataliaDA10!
👉 Grab your spot here – only a few seats left:
physalia-courses.org/courses…⏳
5 Apr 2024
🚨Very happy to inform you that our #RADseq course is back!
‼️🚀Save the date and join us in November to learn how to analyse your RADseq data with this stellar team of instructors @naiara_re @TerezaManousaki and @NataliaDA10 🤩
✏️physalia-courses.org/courses…
@RAD_seq
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3 Jun 2024
Very exciting work led by @LauraMendezCue, illustrating major findings from her PhD work. We show how past seed dispersal by megafauna on Madagascar may explain current genetic differentiation in palm populations 🌴 #frugivory #megafauna #Madagascar #evolution #RADseq
3 Jun 2024
Can we still detect #extinct #megafrugivores' seed dispersal legacy in Malagasy palms' genetics? Yes! However, current frugivores only affect small-fruited palm connectivity, highlighting the crucial role of large frugivores in large-fruited plants' dispersal @RenskeOnstein @idiv
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8 May 2024
Saprolegnia fungus threatens farmed and wild fish stocks. Genomic selection can improve resistance in Eur whitefish Coregonus lavaretus #Saprolegnia #radSeq #ArctAquaEUproject @Merijakala luke.fi/en/news/novel-genoty…
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7 May 2024
Vesihome uhkaa kalankasvatuksen ja luonnon kantojen emokalastoja. Genomisella valinnalla vastustuskykyä siialle. #Saprolegnia #radSeq #ArctAquaEUhanke luke.fi/fi/uutiset/uusi-tekn…
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26 Apr 2024
Over thinking the quality of my RADseq data will be the death of me
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