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micro-manager @manager_micro

Micro-Manager (micro-manager.org) is open source software for microscope control. It is used by thousands of research laboratories world-wide.

Joined January 2021
  • Tweets 16
  • Following 5
  • Followers 364
Photos and videos
Instant molecular orientation imaging using a Thorlabs camera and Micro-Manager: biorxiv.org/content/10.1101/…

POLCAM: Instant molecular orientation microscopy for the life sciences

Current methods for single-molecule orientation localization microscopy (SMOLM) require optical setups and algorithms that can be prohibitively slow and complex, limiting the widespread adoption for...

biorxiv.org
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Neat microscope auto-focus system that works with Micro-Manager: biorxiv.org/content/10.1101/…

A Modular Approach to Active Focus Stabilization for Fluorescence Microscopy

Fluorescent time-lapse experiments often suffer from focus drift, regularly rendering long measurements partially unusable. Frequently, this instability can be traced back to the specific mechanical...

biorxiv.org
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micro-manager retweeted
Alfred Millett-Sikking@amsikking
22 Sep 2022
Microscope objectives can be confusing, and detailed specs (or even basic properties) are often hard to find. Here's an introductory resource to help new builders and instrument designers with the basics. It's a work in progress so feedback is appreciated: amsikking.github.io/microsco…

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Lucien Hinderling@lhinderling
20 Jan 2022
Real-time segmentation of fibroblasts allows us to grow actin skeleton in a specified direction! Cells built @Pertzlab express optogenetic construct to activate RAC. We use @manager_micro and @napari_imaging to train a pixel classifier for segmentation on live data from scope. 🧵
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An Acquisition and Training Module based on @manager_micro for straightforward transformation of basic fluorescence microscopes into experimental cell mechanics rigs: pubag.nal.usda.gov/catalog/7…
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Gregory Batt@gregory_batt
25 Apr 2022
Our MicroMator paper on software to support reactive microscopy is published in @NatureComms. nature.com/articles/s41467-0… Big thanks to @zachrfox, @twitoSebas, @BertauxFrancois and others at @Inria and @institutpasteur.

Enabling reactive microscopy with MicroMator

Nature Communications - In microscopy, applications in which reactiveness is needed are multifarious. Here the authors report MicroMator, a Python software package for reactive experiments, which...

nature.com
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Thanks to Mark Tsuchida you can now install Micro-Manager Python bindings using: conda install -c conda-forge pymmcore
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Jon Daniels@jsdaniel02
15 Nov 2021
Seem an appropriate cue to announce a MM2 plugin "LightSheetManager" to provide an easy interface to all light sheet microscopes, be they custom-built or from commercial parts. CC @Bin_YANG_Optics @DougPShepherd @kschink @MarijnSiemons @Maurice_Y_Lee @mattersOfLight @openspim
Bin Yang@Bin_YANG_Optics
11 Nov 2021
Replying to @kschink @MarijnSiemons @Maurice_Y_Lee
There is certainly a software need for this type of microscope. We will also be working on it at the Biohub. Maybe we should do a coordinated community project? @mattersOfLight @loicaroyer
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Talley Lambert@TalleyJLambert
27 Oct 2021
napari-micromanager is coming along thanks to amazing work from @FedeGasparoli (& help from @ianhi7919!). w/ working @manager_micro property browser, illumination and ROI control, and a multi-D acquisition widget... all python and C with pymmcore 🎉 github.com/tlambert03/napari…
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And @TalleyJLambert's and co-workers @napari_imaging @manager_micro plugin using pymmcore directly
Talley Lambert@TalleyJLambert
22 Oct 2021
Replying to @napari_imaging @manager_micro
very cool @lhinderling ... we're also working on a napari mircromanager plugin here github.com/tlambert03/napari… would love to get your input/thoughts
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A cool looking @napari_imaging interface to @manager_micro using pycro-manager:
Lucien Hinderling@lhinderling
22 Oct 2021
🔬Live-view, channel switching and exposure control in @napari_imaging! Using @manager_micro as backend. Took some tweaking to get stable framerates, but feels snappy now ⚡️
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micro-manager retweeted
Nico Stuurman@nico_stuurman
23 Jul 2021
Fresh on the heels of Micro-Manager 2.0, we are happy to announce a completely revamped @manager_micro website at micro-manager.org. Great work by the @EliceiriK group, you will recognize elements of the imagej net design.

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Nature Methods@naturemethods
5 Mar 2021
Out today! Pycro-Manager: open-source software for customized and reproducible microscope control. nature.com/articles/s41592-0…
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