The Open #Microscopy Environment - #opensource #image tools. Project news, #imaging, #bigdata, #openscience stories & more. [OME logo TM Glencoe Software, Inc.]
Joined July 2008
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813 Photos and videos
Pinned Tweet
3 Feb 2023
With the Twitter APIs soon to be behind a paywall, it is likely to get more difficult to migrate your followers and followees elsewhere. In preparation, please take the time to follow:
@ome@fosstodon.org
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5 Nov 2024
The OMERO installation workshop at #foundingGIDE event at @riken_en in Kobe was followed by the "Imaging workflows in OMERO" workshop. The participants had the satisfaction of installing OMERO on a VM. A lively discussion ensued on Monday 4th November here in Kobe.
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18 Jul 2024
Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations!
Fri., July 26th - Sun., July 28th, 2024
Registration free!
Hybrid event at UNC-Chapel Hill via Google Meet, bit.ly/imagesc-island, & bit.ly/imagesc-chat
zarr.dev/blog/get-your-brain…
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13 Jun 2024
Getting ready for another workshop... This time we are at The Smithsonian Tropical Research Institute in Panama @stri_panama. Looking at very exciting prehistoric plants. Thanks for having us
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3 Jun 2024
Great meeting #OME2024. Very helpful discussions, progress in #OMENGFF, #OMEZarr, new workflows in @bioformats, spreading of #OMERO worldwide continues! See you next year at OME2025! Stay tuned for details and location! #openimagedata, @IDRnews
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New 13 TB study publicly available in IDR! The study has 14 organisms, 13 of which are new to IDR.
Released ahead of its publication - Estimating essential phenotypic and molecular traits from integrative biodiversity data from Peters at al.
idr.openmicroscopy.org/searc…
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13 May 2024
OMERO.server 5.6.11 and OMERO.insight 5.8.4 are now out! See openmicroscopy.org/announcem… for more details
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10 May 2024
Interested in #OMENGFF, #OMEZarr, @bioformats, #OMERO, #openimagedata, @IDRnews, bioimage data repos, data sharing, #FAIR? Come to Dundee May 29-31 for #OME2024. openmicroscopy.org for info and registration.
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openmicroscopy retweeted
23 Apr 2024
Reminder that registration is open for the @openmicroscopy 2024 community meeting in Dundee 29th - 31st May openmicroscopy.org/events/om…
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28 Mar 2024
Save the date and join us in-person in Dundee for 29-31st of May 2024. Looking forward to see you here ! Details and programme to come soon. OME Team
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17 Apr 2024
The registration for the OME 2024 Community Meeting is live now on openmicroscopy.org. Please register by 21st of May. See you soon in Dundee!
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openmicroscopy retweeted
11 Apr 2024
Looking for a way to share your spatial omics datasets?
If you haven't checked out the #SpatialData article (link) or code (quoted tweetorial), now may be the time.
#OMENGFF images🔬integrated with #AnnData tables 📑 all wrapped into #Zarr packages. 🥰
doi.org/10.1038/s41592-024-0…
ALT Fig. 1 from the Nature Methods paper titled "SpatialData Framework". Please see the legend for the full description.
11 Apr 2024
1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: github.com/scverse/spatialda…
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openmicroscopy retweeted
11 Apr 2024
1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: github.com/scverse/spatialda…
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openmicroscopy retweeted
21 Mar 2024
Excited that SpatialData is out @naturemethods! With @OliverStegle & @notjustmoore labs, we introduce & implement a dataframework & fileformat for multimodal spatial omics, based on the @openmicroscopy standard. Read at
nature.com/articles/s41592-0… & try here spatialdata.scverse.org.
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8 Mar 2024
Second day at @UGMYogyakarta OMERO workshop. Further exploration of large pathology images, connection of OMERO and @QuPath , scripts and @FijiSc OMERO plugin. We continued with deep learning app CellPose connected to OMERO via Python API
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7 Mar 2024
Strong start into the first day of the OMERO workshop at @UGMYogyakarta. The OME Team went through basics of OMERO, OMERO.figure and @QuPath extension of OMERO.
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7 Mar 2024
Focused participants looking at Pathology images stored at @dundeeuni and View&Analyze from @UGMYogyakarta. Exciting!
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7 Mar 2024
First OMERO workshop in Indonesia🙏. This is the beginning of an exciting collaboration between @dundeeuni and @ugmyogyakarta. Thanks to Dr Ery and team for making it happen.
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14 Feb 2024
The very lively and intense OMERO.figure workshop organized by LCI @karolinskainst as a part of LCI MIcroscopy course ki.se/en/bionut/lci-microsco… just finished. The recordings will be available soon on youtube.com/@Livecellimaging….
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