Computational Biologist
Joined March 2009
- Tweets 69
- Following 138
- Followers 86
- Likes 82
3 Photos and videos
For those of you hunting for your next position, please consider applying for a postdoctoral position in our lab. Our science is wild and exciting, and I promise to train and feed (yes, w/free food) you well. It doesn't hurt that we are on a publication hot streak.
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Interested in developing biostatistical / machine learning tools with applications in translational cancer microbiome research? I am hiring a postdoctoral scholar @MSKBiostats! Please feel free to DM if you have questions.
linkedin.com/posts/teng-fei-…
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Excited to share our R package for microbiome data analysis, published @CellRepMethods, which makes log-ratio lasso regression more accessible for R users, supporting continuous, binary and survival (competing risks) outcomes.
github.com/vdblab/FLORAL
doi.org/10.1016/j.crmeth.202…
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Tyler Funnell retweeted
11 Apr 2023
Interested in DNA replication and genomic instability? Our new method PERT identifies S-phase cells and estimates replication timing from single cell whole genome sequencing (scWGS) data with heterogeneous copy number biorxiv.org/content/10.1101/… 1/10
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Tyler Funnell retweeted
2 Nov 2022
My new lab at @MSKCancerCenter is recruiting a postdoc and also a computational biologist to work on #microbiome and cancer #immunotherapy.
peledlab.org. Postdoc position linked below. compbio position soon. Please reach out.
tinyurl.com/3m6vpxzr
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12 Feb 2022
My wife, Vicky, made an award-winning & touching short film "Elephant". It's about a jovial old man trying to process his Alzheimer's diagnosis while agonizing over how to protect his love from heartbreak.
vimeo.com/389534683
A love story in time for Valentine's Day 🙂
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15 Dec 2021
Exciting opportunity for a Data Engineer to join the van den Brink lab at MSKCC and help us understand how gut bacteria affect cancer patients!
linkedin.com/jobs/view/28378…
27 Nov 2021
Hey everyone, for something a little different on Black Friday, I'd like to show you a no budget micro-short my wife (I helped a bit) made before the pandemic.
She shot it in <4 hours with a couple of talented SAG actors!
vimeo.com/506658049
#indiefilm #shortfilm #Filmmaking
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Tyler Funnell retweeted
10 Jun 2021
Interested in structural variant mutational processes at single genome resolution? latest preprint, product years of hard work, reveals clock-like serrate structural variants. kudos to @tylerfunnell @oflanach , everyone in @sajraparicio & @SohrabShah labs. biorxiv.org/content/10.1101/…
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Tyler Funnell retweeted
8 Jun 2021
Excited to share some new work with @sajraparicio, @SohrabShah, and teams where we looked at genomic instability at allele-specific resolution in more than 30,000 single-cell whole genomes 1/11
7 Jun 2021
Evolutionary tracking of cancer haplotypes at single-cell resolution biorxiv.org/cgi/content/shor… #bioRxiv
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Tyler Funnell retweeted
7 Jun 2021
Evolutionary tracking of cancer haplotypes at single-cell resolution biorxiv.org/cgi/content/shor… #bioRxiv
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Tyler Funnell retweeted
4 Jun 2021
The impact of mutational processes on structural genomic plasticity in cancer cells biorxiv.org/cgi/content/shor… #bioRxiv
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Tyler Funnell retweeted
10 Sep 2019
CellAssign from @SohrabShah and @kieranrcampbell uses a probabilistic model to leverage prior knowledge of cell-type marker genes to annotate scRNA-seq data. nature.com/articles/s41592-0…
Read our News & Views on supervised clustering for #SingleCellAnalysis.
nature.com/articles/s41592-0…
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Twitter friends: My lab is searching for an eccentric, excited computational postdoc/scientist to lead multimodal (metabolic, immunophenotypic, genetic) analysis in RCC and AML. Job ad coming soon, pls spread the word and come join the vibrant community @CompOncMSK @KidneyCancer
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Tyler Funnell retweeted
9 Sep 2019
Our method CellAssign for automatically assigning cell types from scRNA-seq data is published today
Paper: rdcu.be/bQGtI
R package: github.com/irrationone/cella…
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Tyler Funnell retweeted
2 Mar 2019
Reviewer 2 agreed that the ability to determine structures directly within the cellular environment would "transform structural cell biology" elifesciences.org/articles/3… #fromthedecisionletter #ResearchAdvance
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Tyler Funnell retweeted
1 Mar 2019
New from Funnell et al. Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models plos.io/2INiELc Part of our cross journal #MachineLearning in Health and Biomedicine collection collections.plos.org/mlforhe…
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Tyler Funnell retweeted
22 Feb 2019
A new statistical framework for mutation signature discovery out today: journals.plos.org/ploscompbi… . Fantastic work by @tylerfunnell - integrates multiple mutation types into signature discovery with correlated topic models: relevant to cancers with DNA repair defects.
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Tyler Funnell retweeted
1 Feb 2019
A new approach for detecting somatic mutations from multi-region tumor sequencing out in @CommsBio . Lots of hard work by Fatemeh Dorri- congratulations! nature.com/articles/s42003-0… #muclone
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Tyler Funnell retweeted
16 Jan 2019
How to classify cell types in single cell RNA-seq data without needing to cluster data up front? Use CellAssign - new method from @kieranrcampbell and Allen Zhang in the lab out today: biorxiv.org/content/early/20… , encodes prior information for probabilistic cell-type assignment.
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