🦠 / 🚹🐵🐷🐮🐭🐀🦟🌿🌾🍅Virus-Host protein interactions Network #knowledgebase @postgresql #virology #COVIDー19 #SARSCOV2 #biocuration #interactome #openscience

Joined July 2014
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We are seeking a highly motivated Postdoc to work @amsb_prabi @UnivLyon1 with our interdisciplinary team on #bioinformatics #biogeography solutions to better understand how biogeography shape viral biodiversity at the planetary-scale🦠🌍! More info here: tinyurl.com/mrzjd3fn
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VirHostNet 2.0 retweeted
1/ 🚀 Pathoplexus now supports Bundibugyo virus (BDBV), a species of Ebolavirus. BDBV has been associated with past outbreaks of Ebola in the DR Congo and Uganda, & a case was reported today during response to the current Ebola outbreak. pathoplexus.org/ebola-bdbv #ebola #bdbv
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Since launching support for the Andes virus species of hantavirus two days ago, we've received submissions from four countries' sequencing teams. This is a testament to the rapid response of researchers, sharing real-time data. Read more in our news post: pathoplexus.org/news/2026-05…
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🧬Ultra fast petabase-scale virus discovery is here! 🚀 In our lab’s newest preprint, Jess explores the biodiversity of Papillomaviruses (PVs) in record time 🧵1/5 👇 🔗: doi.org/10.64898/2026
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After several weeks of servers shutdown due to an update of our cloud infrastructure, all the Virhostnet services are now running again, including access to PSIMI-TAB rawdata through our PSICQUIC web services >>> tinyurl.com/2x8294kc . Enjoy virus/host exploration again !

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Join the #virhosnet team on #bluesky to follow our last developpment on virus host interaction networks ! bsky.app/profile/virhostnet.…
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Get ready! Negative Strand RNA Virus meeting #NSV2025 registration will open soon! Co-organized with @wendybarclay11, @vsv512 and Paul Duprex. It will be in vibrant Montpellier, south of France, in June 2025! Please RT
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color me skeptical. Actually, given the incredibly broad and bold claims in this paper, color me *extremely* skeptical
🧬Evo, the first foundation model trained at scale on DNA, is a Rosetta Stone for biology. DNA, RNA, and proteins are the fundamental molecules of life—and cracking the code of their complex language is an ongoing grand challenge. 🔬Today in @ScienceMagazine, the labs of Arc Innovation Investigator @BrianHie and Arc Co-Founder @pdhsu explain how Evo captures two fundamental aspects of biology: the multi-modality of the central dogma and the multi-scale nature of evolution. Evo excels at prediction and generation tasks across all of these molecules and their interactions. An exciting example of what Evo can do: the team used it to design a totally new CRISPR system, including a guide RNA that makes Cas9 cut even better. Evo can also design DNA sequences over one million base pairs in length, reaching the size of many real genomes. 🧠Check out the paper now in Science: science.org/doi/10.1126/scie…
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This is #bioinformatics science fiction but real. Pan-SRA nucleotide search; for free; in minutes 🤯
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If you work with metagenomes (or metatranscriptomes), would like to explore what viruses/phages are in your datasets, but don't know where to start, we have (an) MVP for you now \o/ Really happy to see this one published, and also welcoming feedback/suggestion of improvement!
🎉 Exciting news! We've just published MVP: a Modular Viromics Pipeline 🦠✨ journals.asm.org/doi/epub/10…
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Dr. Babaian (@RNA_Life) and his team are doing big things. Using computational biology and AI, he identified over 150k new RNA viruses in only 11 days. That number will grow to 100 million by 2030. Ep. 12 | In Vivo with Dr. Artem Babaian on Planetary Wide Virus Surveillance - youtu.be/N12C6YyPSjg?si=QJrM…
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'Virology—The next fifty years' - a perspective by Eddie Holmes, @GoodrumVirusLab and myself in Cell cell.com/cell/fulltext/S0092…
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🆁🅴🅲🆁🆄🆃🅴🅼🅴🅽🆃 L'équipe du projet Virome@tlas, financé par #shapemedlyon recherche un ou une ingénieur/ingénieure en bioinformatique. @UnivLyon1 @amsb_prabi
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We are seeking a highly motivated engineers to work @amsb_prabi @UnivLyon1 with our interdisciplinary team on #bioinformatics solutions to better understand how biogeography shape viral biodiversity at the planetary-scale @ShapemedLyon More info here: recrutement.univ-lyon1.fr/po…

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We are seeking two highly motivated candidates to work together with our interdisciplinary team to better understand how biogeography shape viral biodiversity ! @ShapemedLyon To postulate : #bioinformatics : tinyurl.com/24jtf6uw #geoinformatics : tinyurl.com/yc4uvep4
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Excited to share Vclust! It's a fast and accurate tool for calculating intergenomic similarities (like ANI) and clustering virus/#phage genomes/contigs according to ICTV and MIUViG standards. 💻 Tool: github.com/refresh-bio/vclus… 📄 Preprint: biorxiv.org/content/10.1101/… Thread! 1/6 ↓
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The #phylogenetic tree has been a core conceptual tool for #EvolutionaryBiology for nearly 200 years. @RoliRoberts explores the role of the tree as a metaphor, discussing two new #PLOSBiology Essays (by @jlsteenwyk & @caseywdunn) that look to the future plos.io/3VjDSU8
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