Computational Biologist, Head of research @emblebi, part-time @UniHeidelberg, codirector @DR_E_A_M challenges. Low-activity account, mostly retweets @saezlab
Joined March 2011
- Tweets 300
- Following 352
- Followers 2,360
- Likes 166
8 Photos and videos
Julio Saez-Rodriguez retweeted
26 Nov 2024
We present NetworkCommons, a unified platform 🪐 for network biology, providing access to omics data, knowledge, and contextualization methods, all with a consistent API 👇
Paper: doi.org/10.1101/2024.11.22.6…
Docs: networkcommons.readthedocs.i…
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Julio Saez-Rodriguez retweeted
26 Nov 2024
Congrats to @teichlab @humancellatlas We are happy to have contributed a bit to gutcellatlas.org, improving robustness of scAutoQC @slobentanzer, & cell-cell communication analyses @DanielBDimitrov with LIANA (liana-py.readthedocs.io), supervised by @juliosaezrod
🚨 New publication alert! 🚨
As part of the exciting #HCA publication bundle in @Nature, we reveal metaplasia’s role in inflammation in gut diseases, powered by a single-cell atlas of the entire human gastrointestinal tract. 🌟
nature.com/articles/s41586-0…
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Julio Saez-Rodriguez retweeted
11 Nov 2024
What are the key disrupted multicellular processes in heart failure? In our new work we combine 23 years of molecular data with recent single-cell atlases to draw a cross-study patient map. How did we navigate the heart failure space? 🧵⬇️
doi.org/10.1101/2024.11.04.6…
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Are you a student in France studying computer science, statistics, or bioinformatics?
@FranceintheUK has opened a new round of internships hosted at EMBL-EBI.
Find out more and apply.
ebi.ac.uk/about/jobs/interns…
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6 Nov 2024
Welcome @TimCoorens to @emblebi ! Looking forward to working together; Tim is hiring postdocs 👇 #emblebiresearch
5 Nov 2024
Very happy and excited to announce that I'll be starting my own research group at @emblebi! The group will focus on lineage tracing, somatic evolution and the origins of cancer. Interested in doing a postdoc in the group or know someone who is? Please reach out!
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Julio Saez-Rodriguez retweeted
4 Nov 2024
📢 Introducing CORNETO: a unified, knowledge-driven framework for multi-sample network learning & modeling via constrained optimization, supporting a wide variety of network methods and prior knowledge
💻Code: github.com/saezlab/corneto
📜Paper: doi.org/10.1101/2024.10.26.6…
🧵👇
ALT CORNETO: Unified knowledge-driven network inference from omics data
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Julio Saez-Rodriguez retweeted
5 Nov 2024
Our work with @schirmerlab in multiple sclerosis (MS) is out today in @NatureNeuro. We investigated lesion progression and cell-cell communication events in MS using snRNA-seq and spatial transcriptomics 🧠 See below ⬇️
nature.com/articles/s41593-0…
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Julio Saez-Rodriguez retweeted
25 Oct 2024
We're hiring! Join @saezlab as a Staff Bioinformatician at Heidelberg University- Work on multi-omics data in heart disease research (CRC 1550). PhD in computational biology or relevant experience required. 📅 Apply by Nov 18, 2024. tinyurl.com/bddyht5s
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Julio Saez-Rodriguez retweeted
22 Oct 2024
How good is our understanding of signaling pathways? In this study together w/ @savitski_lab @EMBL, we combine multiple state-of-the-art resources to evaluate signaling pathway inference using phosphoproteomics and kinase-substrate networks tinyurl.com/2n43jsc4
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Julio Saez-Rodriguez retweeted
18 Oct 2024
Kidney fibrosis as a molecular process is poorly understood. In this new study together w/ Pepperkok lab @EMBL, we present a time-resolved #multiomics computational network modeling approach in combination w/ phenotypic assays to study #kidneyfibrosis tinyurl.com/multiomicsCKD
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Julio Saez-Rodriguez retweeted
25 Oct 2024
We're also hiring a Research Software Developer. Join us to redesign @omnipathdb and work with Postgres, Python, TypeScript & more) in systems biomedicine. PhD or relevant experience in engineering, CS, or computational bio required. Apply by Nov 18, 2024. tinyurl.com/mwjm56xk
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Julio Saez-Rodriguez retweeted
24 Sep 2024
Post-doc opening to join our lab @emblebi #EMBLEBIresearch to develop/apply #bioinformatics methods to study cellular organization, int/extra cell networks to extract disease mechanisms from sc and spatial multiomic data, with @YvanSaeys, supp by @CZI 👇embl.org/jobs/position/EBI02…
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Julio Saez-Rodriguez retweeted
26 Sep 2024
🫀Check out our new study on fibrosis in HFpEF, a result of great team effort with the @LeuschnerLab #heart
25 Sep 2024
scRNA-Seq profiling of 🫀interstitial cells reveals fibrosis in HFpEF to be distinct from HFrEF including the induction of basement membrane collagens and a protective ⬆️ of ANGPTL4 in murine and human HFpEF | led by @LauraWienecke and @jan_lanzer
doi.org/10.1007/s00395-024-0…
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Julio Saez-Rodriguez retweeted
1 Oct 2024
👉Consider joining us for a post-doc at @emblebi & @ASTRAZENECAUK as part of the EAZPOD program to study multicellular mechanisms associated with #cancer treatment resistance! #postdoc
ebi.ac.uk/research/postdocs/…
30 Sep 2024
Apply to the 2024 EAZPOD Programme at EMBL-EBI & AstraZeneca in Cambridge. Work on cutting-edge computational biology in oncology with world-class scientists & access to state-of-the-art facilities! Learn more & apply: embl.org/jobs/position/EBI02… #Postdoc #Oncology
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Julio Saez-Rodriguez retweeted
13 Sep 2024
Postdoc Opportunity. Join the Saez Rodriguez group! Develop computational methods to explore cellular organization & disease mechanisms using multi-omic data. #Postdoc
embl.org/jobs/position/EBI02…
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🚨Closing soon:
ESPOD fellowships in collaboration with @sangerinstitute - the perfect opportunity to combine experimental & computational approaches for cutting-edge life science research!
🗓️Deadline 29 September
Explore funding, themes and timelines👇
ebi.ac.uk/research/postdocs/…
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Julio Saez-Rodriguez retweeted
6 Sep 2024
Check the latest @DR_E_A_M paper, evaluating methods to deconvolve cellular composition from bulk gene expression, with contributions from our (former) @alvaldeolivas & @JulioSaezRod 👇
4 Sep 2024
Paper is out! Deconvolve cellular composition from bulk gene expression nature.com/articles/s41467-0…
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4 Sep 2024
Still time until 15th September to submit an abstract to join us in Berlin in the @SpatialBio conference 👇
26 Aug 2024
Important information: The abstract deadline for the ESSB conference (December 12/13 2024) has been extended. It is now possible to hand in your abstract until September 15th!
Submit and become part of the ESSB community!
#spatialbiology #ESSB
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4 Sep 2024
Looking for a PhD? Take a look at @embl programme. Among many cool projects, we are recruiting @emblebi, including one position to study host-microbiome interactions in the gut, an @ERC_Research project w @giacomello_lab @ejvillablanca @ZellerGroup
Applications for the EMBL International PhD Programme are open! 👀
The programme offers fully funded PhD positions at EMBL’s six sites across Europe 🌍
Have a look at this opportunity to start your career in the life sciences here:
embl.org/about/info/embl-int…
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Julio Saez-Rodriguez retweeted
2 Sep 2024
📣 The much-revised manuscript of LIANA , our all-in-one solution to study cell-cell communication from single-cell, spatial, and multi-omics technologies, is now published in @NatureCellBio nature.com/articles/s41556-0…
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