Group Leader @emblebi | Former postdoc in @getz_lab @broadinstitute | Former PhD student @sangerinstitute | Lineage tracing, cancer genomics, human development

Joined November 2019
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Very happy and excited to announce that I'll be starting my own research group at @emblebi! The group will focus on lineage tracing, somatic evolution and the origins of cancer. Interested in doing a postdoc in the group or know someone who is? Please reach out!
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Tim Coorens retweeted
🧬 The SMaHT marker paper is now live in @Nature This landmark study characterizes somatic variation across 19 tissue types from 150 nondiseased donors, laying the groundwork for future discoveries in health, aging, and disease. Read the full paper: nature.com/articles/s41586-0…
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The cells in our bodies constantly acquire mutations. But what are the patterns of mutations across tissues? How do mutations in normal cells lead to disease? These and other questions we will tackle within the SMaHT Network, now described in @Nature nature.com/articles/s41586-0…
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This effort would be impossible without the work of many hundreds of people, including the scientists, the NIH staff, and - of course - the donors and their family. A very exciting time to study somatic evolution and I can't wait to see what the next years bring.
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Last but not least, if you're interested in somatic mutations, new technologies and computational genomics - we're hiring a postdoc in my brand new lab @emblebi! Reach out if interested or you have any questions, and apply here: embl.wd103.myworkdayjobs.com…

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Tim Coorens retweeted
This Monday at CIMUS @TimCoorens from @emblebi
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Tim Coorens retweeted
Thrilled to see #SAVANA out in @naturemethods🥳 SAVANA detects haplotype-resolved somatic SVs and copy number aberrations (SCNAs) and infers tumour purity & ploidy in clinical samples using long-read sequencing with or WITHOUT a matched germline control 👇nature.com/articles/s41592-0…
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Tim Coorens retweeted
21 May 2025
1/ 🧵Check out our new study in @NatureGenet, which examines how precancerous conditions (MGUS/SMM) evolve into Multiple Myeloma, and offers new computational methods to predict progression risk and model cancer evolution. doi.org/10.1038/s41588-025-0…
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Tim Coorens retweeted
Call for Papers! @genomeresearch is now encouraging submissions for a Special Issue on The Genetics and Genomics of Somatic Mosaicism, Guest Edited by Drs. @giladevrony, @EAliceLee2, and @R_Rahbari. tinyurl.com/Call-for-papers-… #BOG25 #KSMosaicism25 #MITS25 #somaticmosaicism
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Tim Coorens retweeted
27 Apr 2025
Replying to @AACR
@AACR Seeing friends and gushing about our shared love for DNA 🤓🧬😃🤟@TimCoorens @imartincorena @ivazquezgarcia #AACR25
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Tim Coorens retweeted
25 Mar 2025
🚨OPEN POSTDOC POSITION in our brand new lab space by Madison Sq NYC ! 🌆🧬🔬 Do experiments, learn computation, and uncover drivers of a major mutational process affecting >50% of cancers, driving therapy resistance & impacting immunotherapy responses👇 med.nyu.edu/research/postdoc…
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Tim Coorens retweeted
Check out our new paper in @nature nature.com/articles/s41586-0…. We report genetic mechanisms of neural tube defects in patients. Spina bifida is also known as meningomyelocele (MM). Prior family-based and association studies found few linked genes, so we took a different approach.
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Tim Coorens retweeted
19 Mar 2025
This new paper @Nature today on the genesis and evolution of stomach cancer goes against the alt-model nature.com/articles/s41586-0… nature.com/articles/d41586-0…
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Tim Coorens retweeted
For the first time, scientists have analysed mutations in stomach lining tissue to reveal the earliest stages of cancer. The team also uncovered a potential new cause of stomach cancer, which needs further research 🔎 sanger.ac.uk/news_item/earli…
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Tim Coorens retweeted
Happy to see our new paper out! A great collaboration with @jeshoag. We collected sequential sperm samples separated by decades, and used high-fidelity sequencing to measure germline mutation rates in individual men. nature.com/articles/s41467-0…
New paper from my group and @giladevrony’s! nature.com/articles/s41467-0… Historically we measured new mutations in humans using trio studies (parents and offspring). This taught us that on average new mutations increase in offspring with paternal age. These trio studies showed that mutations in sperm account for 80% of new mutations in humans! These are responsible for our genetic diversity and many genetic diseases. But these studies measure population averages rather than the rate of mutations in individual men. To address this, we recalled men who had banked sperm from an average of 19 yrs ago (up to 33 yrs)- to provide a new sperm sample. Applying recent advances in DNA duplex sequencing and whole-genome sequencing to these paired samples, we measured a mutation rate for each man. Mutational patterns seen by direct sperm sequencing matched incredibly well to prior trio studies. And in two men, we found that mosaicism of embryonic mutations hardly changed in sperm with age, indicating remarkable stability of spermatogonial stem cell pools over decades. We thank our amazing collaborators and funding from @NICHD_NIH. See also exciting recent preprints by @R_Rahbari and @aaronquinlan!
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The stomach is an organ unique in its function, environment and exposures. How does this affect the mutations that normal cells in the stomach acquire? What does this reveal about the origins of stomach cancer? These questions and more in our Nature paper: nature.com/articles/s41586-0…
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In short, the normal stomach shows a landscape of somatic mutations with many differences from those of other organs. Our findings provide insights into intrinsic and extrinsic influences on somatic evolution in the gastric epithelium in healthy, precancerous and malignant states
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Thanks to all the donors and their families for making this study possible. And many thanks to Grace Collord, @KSaebParsy, Peter Campbell, @imartincorena, SY Leung, Mike Stratton and all other co-authors.
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