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3 Sep 2025
This study rethinks #StakeholderEngagement in #AgentBasedModeling, exploring hidden dimensions of #Expertise, its diverse sources, and its subtle influence on #ComputationalModels and the #ModellingProcess. Read the full #OpenAccess article on #jasss: jasss.org/28/3/10.html
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Sanskrit is more than #Literature & #Philosophy. #Universe spoke in #Sanskrit long before #Binary. It’s a #Scientific #Language powering #Research in #MachineLearning, #AI & #ComputationalModels. On #WorldSanskritDay, we honour this ancient #Indian code of #Knowledge & #Wisdom.
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FAIRification of Computational Models in Biology 1. This paper introduces a structured approach to assessing the FAIRness (Findability, Accessibility, Interoperability, Reusability) of computational models in biology, particularly those encoded in domain-specific standards like SBML and CellML within the COMBINE community. 2. The authors present the FAIR COMBINE Archive Indicators project, aimed at adapting the Research Data Alliance (RDA) FAIR indicators to the specific requirements of computational models and archives, creating a new set of 84 indicators covering both models and metadata. 3. Unlike previous efforts, this project focuses on developing a semi-automatic tool to assess FAIRness, integrating features such as automated metadata detection, visual interfaces, and improved handling of model and archive data. 4. The proposed assessment framework distinguishes between models and archives, providing tailored indicators for each. Archives are evaluated based on omex format standards, while models are assessed according to SBML, CellML, SBGN, and SED-ML standards. 5. The authors emphasize the importance of metadata, recommending the separation of data and metadata to enhance accessibility and reusability. They propose using unique IDs for each model, model version, metadata file, and archive to improve reproducibility. 6. Community-driven workshops and hackathons were employed to refine the indicators, engaging stakeholders from the COMBINE community, including developers, curators, and repository maintainers. 7. The tool prototype developed under this project provides automated assessment for some indicators and manual input options for others. The authors encourage further development of this tool for broader adoption and usability. 8. Recommendations include establishing community guidelines for FAIRification, improving metadata standards, and encouraging the use of the assessment tool as part of the model publication process. 9. The project highlights the role of the European Open Science Cloud (EOSC) and the Research Data Alliance (RDA) in promoting open science and improving the quality of computational biology research through enhanced FAIR practices. @dagmarwaltemath @satagopam @kirubel_biruk @konigmatt @irinabalaur 💻Code: github.com/FAIR-CA-indicator… 📜Paper: biorxiv.org/content/10.1101/… #FAIRification #ComputationalModels #Bioinformatics #FAIRPrinciples #COMBINE #OpenScience #Metadata #SBML #CellML #FAIRCOMBINE
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10 Oct 2024
Happy to present at the Multidisciplinary #DecisionScience Meeting hosted by @decisioncenter & @DondersInst, sharing the stage w/amazing researchers who use #computationalmodels in their work. Grateful to share my research on how we (@SanfeyLab) use models to study #inequality.
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29 Aug 2024
🔎 Meet the #MetaBrainTeam! 🔬 @CNRsocial_’s @IeiitC will implement #BrainModels and run simulations led by Marta Parazzini, and #Cnr_Imm will develop new ultrasound strategies for #BrainStimulation, led by Dr. @maiolo_luca. Find out more: meta-brain.eu/news/cnrs-cont… #metabrain_eu
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24 Jul 2024
🚀 Join us for Day 1 Oral Session 2: "Medical Images and Computational Models" at MIUA 2024! Dive into cutting-edge research and advancements in the field. 🌟 #MIUA2024 #researchpaper #Innovation #ComputationalModels @TheBMVA
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How should we approach the modelling of #complex systems such as #Alzheimerdisease in the brain? #Computationalmodels can handle this complexity. Check out Seyed's review on the topic right here: buff.ly/3xiJGnM
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Idea submissions and team lead signups close this weekend on June 8 for the #NIH_SPARC #FAIRData codeathon! Submit your ideas on #DataVisualization, #ComputationalModels, and other analysis tools today. bit.ly/436EHlt
Project Pitch is now open for the 2024 SPARC FAIR Codeathon! Show off your coding skills in this 3-day virtual challenge! It's free to enter, and there's $50k up for grabs. Leverage SPARC tools and data in innovative ways. bit.ly/436EHlt #data #openscience #python #code
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Last day to submit your poster for @cosi_sysmod to presented at #ISMB2024 in Montreal, QC or virtually! Submit now iscb.org/ismb2024/submission… #systemsmodeling #computationalmodels #ISCB @iscb

@cosi_sysmod is accepting late breaking posters until May 2024! Submit now to be part of this annual ISMB conference. #systemsbiology #computationalmodels Submit here: iscb.org/ismb2024/submission…
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@cosi_sysmod is accepting late breaking posters until May 2024! Submit now to be part of this annual ISMB conference. #systemsbiology #computationalmodels Submit here: iscb.org/ismb2024/submission…

1 May 2024
Want to be part of SysMod at the ISMB in Montreal, Canada? It is not too late! We are accepting late poster submissions until May 20, 2024. Submit here: iscb.org/ismb2024/submission… #systemsbiology #mathematicalmodeling #computationalmodels
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1 May 2024
Want to be part of SysMod at the ISMB in Montreal, Canada? It is not too late! We are accepting late poster submissions until May 20, 2024. Submit here: iscb.org/ismb2024/submission… #systemsbiology #mathematicalmodeling #computationalmodels
26 Apr 2024
📢Call for Late-Breaking Posters! 📢 It’s not too late to be part of ISMB! Late poster submissions will be accepted until May 20, 2024. Submit your poster today: iscb.org/ismb2024/submission…
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Join us for the 2nd @discourseinpsy satellite meeting! We will discuss #language in #psychosis, #pragmatics, #computationalmodels, and much more. Mon 8th of April, from 9AM-6.30PM, organized by @IUSS and @SanRaffaeleMI Zoom link 👉iusspavia.zoom.us/my/br.sala…
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21 Mar 2024
Congratulations to ICT's Dr. Kushal Chawla who has been awarded his PhD! Dr. Chawla's research focused on #computationalModels for #dialogueAgents to #negotiate with humans. His proud Advisor throughout this process was Gale M. Lucas, PhD with Jonathan Gratch. @kushalchawla18
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12 Dec 2023
#PerMedCoE is pleased to have sponsored ten @EMBO Workshop 2023: #Computationalmodels of life #grants for #femalescientists. What were their expectations, and were they fulfilled? Check the interviews to learn more about their overall experience. ➡️ow.ly/FTea50QhOYZ
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1 Dec 2023
🏁 Last session of the @EMBO Workshop 2023: #Computationalmodels of life by Javier Conejero (@BSC_CNS) on "Programming workflows with #PyCOMPs and #PerMedCoE Building Blocks" A big thank you to everyone for making the #EMBOworkshop such a success! #HPC #EMBOcompModels
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1 Dec 2023
📢The last day of the @EMBO Workshop 2023: #Computationalmodels of life Mariano Vazquez from @ELEM_Biotech held an insightful session "Supercomputer-based in-silico clinical trials on #VirtualHumanTwins" #PerMedCoE #HPC #digitaltwins #EMBOworkshop #EMBOcompModels
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30 Nov 2023
🧐Great presentation yesterday by @SaranPankaew from the @institut_curie on "The Power of Logic: Modeling #Cancer across scale, supported by omics data" at the @EMBO Workshop 2023: #Computationalmodels of life #PerMedCoE #HPC #digitaltwins #EMBOworkshop #EMBOcompModels
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Reminder: We invite you to participate in our free seminar on Friday, December 1st. We will hear from Dr. T.J. Sego from @UF and Dr. James Glazier from the @IndianaUniv. Register: washington.zoom.us/meeting/r… #biomodeling #computationalmodels #multiscalemodeling #multicellsimulation
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