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Javier Santoyo@jsantoyo
1 Dec 2025
RMPore: a comprehensive database of single-molecule RNA modifications detected by Nanopore direct RNA sequencing. #RNAmodifications #Nanopore #DirectRNAseq #Bioinformatics #Genomics #NAR academic.oup.com/nar/advance…
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Javier Santoyo@jsantoyo
8 Nov 2025
Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing. #DirectRNAseq #RNAsequencing #RNAmodifications #m6A #Genomics #Bioinformatics @nanopore biorxiv.org/content/10.1101/…
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Javier Santoyo@jsantoyo
6 Nov 2025
Establishing benchmarks for quantitative mapping of m6A by Nanopore Direct RNA Sequencing. #DirectRNAseq #Sequencing #RNAmodifications @nanopore biorxiv.org/content/10.1101/…
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Javier Santoyo@jsantoyo
2 Nov 2025
DirectRM: integrated detection of landscape and crosstalk between multiple RNA modifications using direct RNA sequencing. #DirectRNAseq #RNAmodifications @Nanopore #Sequencing @NatureComms nature.com/articles/s41467-0…
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株式会社ジーンベイ@GeneBayInc
29 Oct 2025
📢NGS EXPO 2025　出展中です 📍29日(水) 12:25～　ランチョンLS1 📍29日(水) 17:30～　ポスター発表P23 📍企業ブース №27 #ウルトラロングリード #DirectRNAseq ちょっと驚きの情報が手に入るかも！？😳 ぜひお立ち寄りください
NGS EXPO@ngsexpo
15 Jul 2025
NGS EXPO 2025の演題登録は8月31日までです。 演題を出して是非、無料で参加ください！ 今年は奈良に引っ越しして開催です。 場所：奈良県コンベンションセンター 日時：10月29日(水)~30日(木） HP: ngsexpo.jp/expo2025/index.ht…
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Javier Santoyo@jsantoyo
16 Oct 2025
The new era of single-molecule RNA modification detection through nanopore base-calling models. #DirectRNAseq #RNAmodifications #Nanopore #Sequencing #BaseCalling #Genomics @nanopore nature.com/articles/s41580-0…
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Javier Santoyo@jsantoyo
4 Jun 2025
Single-molecule direct RNA sequencing reveals the shaping of epitranscriptome across multiple species. #DirectRNAseq #Epitranscriptomics #SingleMoleculeSequencing #NanoporeSequencing @nanopore @NatureComms nature.com/articles/s41467-0…
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Javier Santoyo@jsantoyo
29 Sep 2024
Combining Nanopore direct RNA sequencing with genetics and mass spectrometry for analysis of T-loop base modifications across 42 yeast tRNA isoacceptors. #tRNA #DirectRNAseq @nanopore #Sequencing @NAR_Open academic.oup.com/nar/advance…

Combining Nanopore direct RNA sequencing with genetics and mass spectrometry for analysis of T-loop...

Abstract. Transfer RNAs (tRNAs) contain dozens of chemical modifications. These modifications are critical for maintaining tRNA tertiary structure and opti

academic.oup.com
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3,913
Javier Santoyo@jsantoyo
1 Sep 2024
Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics. #DirectRNAseq @nanopore #Sequencing #TranscriptomeDynamics #NARgenomicsAndBioinformatics academic.oup.com/nargab/arti…

Deep learning and direct sequencing of labeled RNA captures transcriptome dynamics

Abstract. In eukaryotes, genes produce a variety of distinct RNA isoforms, each with potentially unique protein products, coding potential or regulatory si

academic.oup.com
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1,544
Javier Santoyo@jsantoyo
26 Aug 2024
Direct RNA sequencing in plants: practical applications and future perspectives. #DirectRNAseq #PlantGenomics #Review @MPlantPCom cell.com/plant-communication…
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Javier Santoyo@jsantoyo
24 Jun 2024
Full-length direct RNA sequencing reveals extensive remodeling of RNA expression, processing and modification in aging Caenorhabditis elegans. #DirectRNAseq #RNAmodifications @nanopore #LongReads #sequencing @biorxivpreprint biorxiv.org/content/10.1101/…

Full-length direct RNA sequencing reveals extensive remodeling of RNA expression, processing and...

Organismal aging is marked by decline in cellular function and anatomy, ultimately resulting in death. To inform our understanding of the mechanisms underlying this degeneration, we performed...

biorxiv.org
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Javier Santoyo@jsantoyo
22 Jun 2024
Multicellular, IVT-derived, unmodified human transcriptome for nanopore-direct RNA analysis. #DirectRNAseq @nanopore #RNAmodifications #Sequencing @GigaScience gigabytejournal.com/articles…
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Javier Santoyo@jsantoyo
22 Jun 2024
RNA m6A detection using raw current signals and basecalling errors from nanopore direct RNA sequencing reads. #DirectRNAseq #m6A @nanopore #Sequencing #Bioinformatics academic.oup.com/bioinformat…

RNA m6A detection using raw current signals and basecalling errors from Nanopore direct RNA...

AbstractMotivation. Nanopore direct RNA sequencing (DRS) enables the detection of RNA N6-methyladenosine (m6A) without extra laboratory techniques. A numbe

academic.oup.com
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2,111
Javier Santoyo@jsantoyo
18 Apr 2024
Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data. #m6A #DirectRNAseq #RNATrainingDataset @nanopore @NatureComms nature.com/articles/s41467-0…

Detecting m6A at single-molecular resolution via direct RNA sequencing and realistic training data

Nature Communications - Direct RNA-seq offers the possibility to identify RNA modifications on single molecules. Here, the authors report on the synthesis of biologically realistic training data...

nature.com
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Javier Santoyo@jsantoyo
4 Mar 2024
Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing with RISER. #DirectRNAseq @nanopore #Sequencing #RealTimeRNAdepletion @EduEyras @biorxivpreprint biorxiv.org/content/10.1101/…

Biochemical-free enrichment or depletion of RNA classes in real-time during direct RNA sequencing...

The heterogeneous composition of cellular transcriptomes poses a major challenge for detecting weakly expressed RNA classes, as they can be obscured by abundant RNAs. Although biochemical protocols...

biorxiv.org
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Javier Santoyo@jsantoyo
25 Feb 2024
Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing. #m6A @nanopore #DirectRNAseq @BriefingBioinfo academic.oup.com/bib/article…

Benchmarking of computational methods for m6A profiling with Nanopore direct RNA sequencing

Abstract. N6-methyladenosine (m6A) is the most abundant internal eukaryotic mRNA modification, and is involved in the regulation of various biological proc

academic.oup.com
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1,909
Javier Santoyo@jsantoyo
15 Nov 2023
De novo basecalling of m6A modifications at single molecule and single nucleotide resolution. #m6A #RNAmodification #DirectRNAseq @nanopore #sequencing @EvaMariaNovoa @biorxiv_bioinfo biorxiv.org/content/10.1101/…
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Southern Alberta Genome Sciences Centre (SAGSC)@SAGSC_genome
16 Oct 2023
Don't miss our own Dr. Elly Wu @ZovoilisLab presenting at @AlbertaBioNet #BioNetSpeakerSeries this Wednesday ‼️ #nanopore #directRNAseq #RNAmodifications

ALT Yay Cant Wait GIF
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Javier Santoyo@jsantoyo
14 Sep 2023
Sequencing accuracy and systematic errors of nanopore direct RNA sequencing. #DirectRNAseq @nanopore #Sequencing @biorxivpreprint biorxiv.org/content/10.1101/…
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Javier Santoyo@jsantoyo
2 Sep 2023
Nanopore-based direct sequencing of RNA transcripts with ten different modified nucleotides reveals gaps in existing technology. #DirectRNAseq @Nanopore #Sequencing #RNAmodifications #G3 academic.oup.com/g3journal/a…

Nanopore-based direct sequencing of RNA transcripts with 10 different modified nucleotides reveals...

Abstract. RNA undergoes complex posttranscriptional processing including chemical modifications of the nucleotides. The resultant-modified nucleotides are

academic.oup.com
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