Come on join us! We are searching for the next technical associate to join our lab ~Summer 2026.
This could be a great position for someone who is graduating this spring and is looking for 2 more years of research experience before starting their PhD:
careers.peopleclick.com/care…
We had a wonderful time celebrating together at our lab’s holiday party, enjoying good company, good food, and a very fun lab trivia. Grateful for a great year and an even better team!
The @Anders_S_Hansen Lab find tiny loops in the genomes of dividing cells. Enabled by a new high-resolution mapping technique, the findings overturn a long-held belief that the genome loses its 3D structure when cells divide. @NatureSMBow.ly/th0l50Xf782
Jamie Drayton and I were fortunate to contribute RCMC to this beautiful paper from Eder, Moene...van Steensel that systematically maps the relationship between enhancer location and gene expression (and nice to see RCMC predict expression in Fig 2H-I): science.org/doi/10.1126/scie…
Congratulations to Masahiro Nagano on his new paper on STAG3-cohesin.
STAG3-cohesin has a much shorter residence time which leads to altered 3D genome organization and STAG3-cohesin is important for male germ cell differentiation.
nature.com/articles/s41594-0…
(1/n) New preprint from @claricehongky Fan Fang @VarshiniRam23 in collab w Jie Liu
Q: How do we get ultra-high-res 3D genome maps?
A: New deep learning model, Cleopatra.
Cleo trains on Micro-C, fine-tunes on RCMC, and predicts genome-wide 3D maps
biorxiv.org/content/10.1101/…
Excited to share my first preprint from @hansen_lab! It's got genomics, AI, and biology - all wrapped up in a great paper. Also very grateful to my amazing collaborator, Fan, for all his hard work. Please check it out and let me know what you think!
tinyurl.com/bdfvtd6f
Mostly on BlåSky but excited to share James Jusuf's preprint:
By integrating Micro-C with SuperRes Live-Imaging we perform absolute quantification of looping (e.g. this loop is present 3%).
We quantify mESC 36k loops: <loops> are generally rare (2.3%).
biorxiv.org/content/10.1101/…
Our preprint by @DomenicNarducci and the companion preprint by @deWitLab are now out in @MolecularCell
ZNF143 is not a general looping factor and was identified as such due to a non-specific antibody. Instead it is TF with the longest residence time measured (to our knowledge)
#NIHHighRisk Transformative Award recipient Dr. Anders Hansen of @MITdeptofBE will be exploring how transcription factors find their target cites in synthetic and #CancerBiology
(1/n) From @ViraatGoel @Irate_Physicist et al. collab w @blobelgroup@leonidmirnybiorxiv.org/content/10.1101/…
RCMC at the M-to-G1 transition reveals strong microcompartments between CREs (E,P) in mitosis, that weaken upon G1 entry
Sims reveal chromosome compaction as key regulator
Happy to share my thesis work, now online at bioRxiv. We show that LDB1 organizes Enhancer-Promoter interaction networks and can function independently of cohesin!
biorxiv.org/content/10.1101/…