@neuronflow profile picture
Florian Kofler @neuronflow
Joined April 2014
  • Tweets 59
  • Following 118
  • Followers 70
3 Photos and videos
🎓 We’re hiring PhD researchers! Work on AI for brain health using MRI, 3D microscopy & clinical data @Uni_Tuebingen 🧠 Join Hertie AI within the Tübingen AI Center & ML Cluster of Excellence 🚀 linkedin.com/feed/update/urn…

🎓 We’re hiring PhD researchers in AI & brain health! Passionate about machine learning, medicine,...

🎓 We’re hiring PhD researchers in AI & brain health! Passionate about machine learning, medicine, and neuroscience? Join the Hertie Institute for AI in Brain Health at the University of Tübingen and...

linkedin.com
105
Florian Kofler retweeted
BraTS inpainting@BraTS_inpaint
5 Oct 2025
The #MICCAI2025 #BraTS #inpainting challenge this year was a blast! We would like to thank and congratulate all challenge participants and organizers! Algorithms and method descriptions are now available to the public. Read our summary on LinkedIn: tinyurl.com/3e3rk6wy
1
4
208
Florian Kofler retweeted
Hongwei Bran Li@HongweiBran
26 Jun 2025
We look forward to your innovative contributions to this exciting area of research! This challenge is jointly organized by @JuanEugenioIgl1, @RosenLab, Bene Wiestler, @neuronflow, myself, and the @BraTS_challenge organizing team.
2
4
423
Florian Kofler retweeted
menze_group@menze_group
10 Jun 2025
1/ 🚨 Interested in robust blood vessel segmentation in arbitrary 3D (bio)medical images? Then check out "vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation" to be presented at #CVPR25
1
3
8
333
Florian Kofler retweeted
AIME@aime_bird
4 Jun 2025
🚀 AIME G500 Blackwell Pro AI Workstation 🚀 The AIME G500 is the most powerful HPC workstation worldwide, designed as maintainable high-end workstation with enough cooling and PSU capacity to host up to four high-end GPUs.
1
1
63
Florian Kofler retweeted
BraTS inpainting@BraTS_inpaint
4 Jun 2025
The validation phase of this year’s BraTS Inpainting Challenge is on! #BraTS2025 #Lighthouse #MICCAI Looking forward to seeing your creative and innovative ideas! synapse.org/Synapse:syn64153…
4
7
372
Florian Kofler retweeted
Machine Learning for Biomedical Imaging@MELBAJournal
4 Apr 2025
🚨 New publication alert: 📢 “Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge.” 🖊️ D LaBella, U Baid, O Khanna, S McBurney-Lin, …, J Villanueva-Meyer, A M Rauschecker, A Nada, M Aboian, A E Flanders, B Wiestler, S Bakas, E Calabrese. ⬇️
1
1
2
242
Florian Kofler retweeted
Ali Max Erturk
@erturklab
10 Dec 2024
Spatial proteomics is crowned Method of the Year! 🎉 Explore our groundbreaking work on bringing proteomics into 3D (yes, spatial! 😉): cell.com/cell/pdf/S0092-8674…. And don’t miss my latest review on 3D spatial omics using tissue-clearing and AI: nature.com/articles/s41592-0…. 🚀

Nature Methods@naturemethods
6 Dec 2024
The wait is over!! We are thrilled to announce that we have chosen Spatial Proteomics as 2024’s Method of the Year! 🥳 For more on Spatial Proteomics and a road map to this special issue, please see this month’s Editorial or read on in this thread. nature.com/articles/s41592-0…
1
12
108
11,532
Florian Kofler retweeted
menze_group@menze_group
31 Oct 2024
(1/3) Introducing CT-CHAT 💬, a multimodal generalist AI assistant designed specifically for 3D chest CT analysis. Trained on over 2.7M question-answer pairs, CT-CHAT builds upon the foundations of CT-RATE and CT-CLIP and excels as a chat model for 3D medical imaging!
1:58
3
6
14
2,716
We present MultiOrg: an #organoid dataset tailored for #object_detection tasks with #uncertainty quantification. Over 400 high-resolution 2D #microscopy images and multi-expert annotations of more than 60,000 organoids. Paper: arxiv.org/abs/2410.14612 Data: kaggle.com/datasets/christin…
12
28
2,478
Florian Kofler retweeted
BraTS inpainting@BraTS_inpaint
14 Oct 2024
Congratulations to all participants of the #MICCAI2024 Brain Synthesis Challenge! Your hard work and innovative contributions are driving advancements in medical imaging and AI. You guys are making a real impact! #BraTS, #BraTS2024, #inpainting
1
1
4
484
Florian Kofler retweeted
Doris Kaltenecker@Dorie00
21 Aug 2024
Super excited to share our latest preprint with you 🤩 We've tackled the challenge of visualizing obesity-induced changes in peripheral nerves and immune cells on the whole-body scale and developed an AI-powered pipeline to precisely quantify these changes.
Ali Max Erturk
@erturklab
21 Aug 2024
Imagine seeing a disease's impact on every cell in the body. Now, you can! We introduce MouseMapper, an AI tool to reveal system-wide disease perturbations. MouseMapper showed obesity-induced changes in facial nerves & body-wide inflammation 👉🏼🧵biorxiv.org/content/10.1101/…
1:32
4
27
79
11,166
Florian Kofler retweeted
Harsharan Bhatia@HarsharanBhatia
12 Jul 2024
Check this out “fresh” perspective by @erturklab now online @naturemethods
Nature Methods@naturemethods
12 Jul 2024
Check out our July Editorial about tissue histology in 3D, which is paired with related content in the issue such as a Perspective about Deep 3D Histology, a Comment about Cellomics, and an Article about a VR-based approach for generating training data for 3D histology (1/4).
1
4
8
2,018
Florian Kofler retweeted
Harsharan Bhatia@HarsharanBhatia
12 Jul 2024
Congratulations 🎉🥳@erturklab for yet another cover @naturemethods once again kudos to @Dorie00 @Rami96614090 @moritz_negwer and team!
Nature Methods@naturemethods
12 Jul 2024
The July issue is live today! nature.com/nmeth/volumes/21/… The beautiful cover comes from the @erturklab and shows c-Fos neuronal mapping in whole mouse brains. See paper: nature.com/articles/s41592-0…
1
4
22
1,180
Florian Kofler retweeted
Ali Max Erturk
@erturklab
22 Apr 2024
Very excited to share that our DELiVR method is now open access published @NatureMethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s41592-0… by @Dorie00 @Rami96614090 @moritz_negwer
1:59
7
126
512
56,843
Florian Kofler retweeted
Harsharan Bhatia@HarsharanBhatia
22 Apr 2024
Excited to deliver you our DELiVR method! Congratulations 🥳🎉 team @erturklab
Ali Max Erturk
@erturklab
22 Apr 2024
Very excited to share that our DELiVR method is now open access published @NatureMethods. We created a simple, brain-wide cell analysis deep learning tool, no coding needed! Fiji Plugin makes it accessible to all. nature.com/articles/s41592-0… by @Dorie00 @Rami96614090 @moritz_negwer
1:59
4
21
1,133
Florian Kofler retweeted
Harsharan Bhatia@HarsharanBhatia
17 Apr 2024
Our wildDISCO cover is live now 😊congratulations once again to our team @erturklab 👏🎉🥳
Nature Biotechnology
@NatureBiotech
17 Apr 2024
The April issue is live nature.com/nbt/volumes/42/is… Our cover shows an image of a whole mouse body with depth color-coding of a neuronal marker. Mai et al. present wildDISCO, a method for whole-body imaging compatible with standard IgG antibody labeling go.nature.com/3PXs1Zw
2
28
997
Florian Kofler retweeted
Ezequiel@ezeq_dlrosa
2 Apr 2024
Our ISLES'22 challenge preprint on ischemic stroke lesion segmentation is now available! 🎉 Here are some key takeaways: (1/5)
1
5
9
1,172
🍻EXCITING DAY: Our @naturemethods sister publications on #MetricsReloaded are out🎉. Recommendations: rdcu.be/dysg5 Pitfalls: rdcu.be/dysgX @helmholtz_image @bias_sig @ProjectMONAI @NCT_HD @DKFZ Important for the community: 1/
6
74
202
43,529
Florian Kofler retweeted
Mert R. Sabuncu 🤖🩻⚕️@mertrory
27 Nov 2023
🔥
Machine Learning for Biomedical Imaging@MELBAJournal
27 Nov 2023
$3,200 as the publication fee is still a lot! Many folks can't really afford this and we believe such high fees are unjustified. At MELBA, our goal is to bring this down to ZERO. Currently, we charge $10 as a submission fee and that's it. And we are fully open access. Consider supporting the independent non-profit journals in your field.
1
1
7
1,733
Load more