@HannahSpitzer1 profile picture
Hannah Spitzer @HannahSpitzer1

Machine learning researcher with focus on biomedical and neuroscience applications

Joined December 2018
  • Tweets 18
  • Following 23
  • Followers 296
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Our cross-species pancreas development analysis is out! A huge thanks to @Carina_K_YANG for this amazing collaboration, and having patience with me while I learnt about pancreas development 👍
Heiko Lickert@LickertHeiko
9 Apr 2024
Thrilled to share our work “A multimodal cross-species comparison of pancreas development”. doi.org/10.21203/rs.3.rs-415… A tremendous collaborative effort led by @Carina_K_YANG & @HannahSpitzer1, and other members of @LickertHeiko @fabian_theis, Eckhard Wolf labs.
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I‘m very proud that CAMPA is finally out in @naturemethods! This was one of my main postdoc projects and an awesome collaboration with @scottbscience - also thanks to @fabian_theis and @lucaspelkmans for all of your support and guidance!
Fabian Theis
@fabian_theis
31 May 2023
Replying to @naturemethods
Happy that CAMPA is out @naturemethods - led by @HannahSpitzer1 & @scottbscience w @lucaspelkmans we developed a conditional autoencoder for multiplexed image analysis, learning subcellular landmarks consistent across perturbations. github.com/theislab/campa nature.com/articles/s41592-0…
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Interested in how to do interpretable lesion detection in a large real-world multi-centre cohort? Check out our new paper on this - an amazing team effort together with @mathrip3 @sophieadler @KonradWagstyl
Sophie Adler@sophieadler
12 Aug 2022
We are SO EXCITED that our paper "Interpretable surface-based detection of focal cortical dysplasias: a @meld_project study" is published in @Brain1878 academic.oup.com/brain/advan… 🧵👇
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Very excited to share our new work on learning consistent subcellular landmarks! #CAMPA allows for quantitative analysis of multiplexed protein imaging in different conditions. Check out the manuscript biorxiv.org/content/10.1101/… and the code campa.readthedocs.io

Learning consistent subcellular landmarks to quantify changes in multiplexed protein maps

Highly multiplexed quantitative subcellular imaging holds enormous promise for understanding how spatial context shapes the activity of our genome and its products at multiple scales. Yet unbiased...

biorxiv.org
Scott Berry@scottbscience
9 May 2022
Happy to share #CAMPA 🏕, our new analysis method for highly multiplexed subcellular protein imaging. The first collaboration between @fabian_theis group and @pelkmanslab led by @HannahSpitzer1 and me. biorxiv.org/content/10.1101/… 🧵 1/10
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Hannah Spitzer retweeted
Giovanni Palla@g_palla1
31 Jan 2022
Squidpy 🌌🍤🐍🎉 is out in @naturemethods ! Truly collab effort with @HannahSpitzer1 Michal Klein @fabian_theis lab! nature.com/articles/s41592-0…

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Hannah Spitzer retweeted
Fabian Theis
@fabian_theis
15 Nov 2021
Excited that our Squidpy & @napari_imaging integration project was awarded by @cziscience 🥳🎉 We'll develop a Napari plugin to visualize & integrate sets of spatial omics data, bringing closer the #scanpy community with the #skimage imaging community. chanzuckerberg.com/science/p…

Interactive Visualization of Spatial Omics Data - Chan Zuckerberg Initiative

chanzuckerberg.com
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We are very excited to release Squidpy 1.1 🌌🦑🍤 squidpy.readthedocs.io/en/st… Lots of new features in the thread below! This is joint work with @g_palla1 Michal Klein and @fabian_theis group. @scanpy_team @HelmholtzMunich @ICBmunich
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This release also brings you sepal from @aalmaander for spatially variable genes, new graph building methods, and extended functions for spatial statistics. squidpy.readthedocs.io/en/st…

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Finally, we added new example datasets! You can access SeqFISH, MERFISH, Slide-seqV2, Visium, Mibi-tof, 4i, IMC datasets through the Squidpy API to try out all the new functions!  squidpy.readthedocs.io/en/st… Thanks to @macosko @AleksGoeva for providing pre-processed Slide-seqV2 data!
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Hannah Spitzer retweeted
Fabian Theis
@fabian_theis
22 Feb 2021
Excited to share 'Squidpy', our toolbox for spatial single cell analysis. Led by @g_palla1 & @HannahSpitzer1, we extend #Scanpy's infrastructure and analyses to store, manipulate & interactively visualize spatial omics data. Read at biorxiv.org/content/10.1101/… squidpy.readthedocs.io
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Helmholtz AI@helmholtz_ai
10 Feb 2020
Congratulations @HannahSpitzer1!
Susanne Wenzel@wenzel_susanne
10 Feb 2020
Congrats to @HannahSpitzer1 who defended her thesis today. Well done! @fz_juelich @BigBrainProject @helmholtz_ai
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I am proud to be nominated as AI newcomer for the #KI50 @informatikradar for my work on automatic segmentation of brain areas done @fz_juelich! I would appreciate your vote: ki50.de/ki-newcomer/naturwis…

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