Bioinformatics Scientist @ Theiagen Genomics| PhD in computational biology | enjoys metagenomic nerd talk | gets mean when hungry
Joined January 2018
- Tweets 1,420
- Following 286
- Followers 687
- Likes 2,992
186 Photos and videos
Pinned Tweet
11 Jul 2023
I'm happy to share my very first publication with @theiagen entitled "Accelerating bioinformatics implementation in public health". We present the use of @TerraBioApp as an analysis platform to connect public health users to bioinformatics - go.shr.lc/3pLRVVu
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Inês Mendes retweeted
2 Apr 2024
Come and do a Master’s with us!
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Inês Mendes retweeted
15 Dec 2023
Recently, @andrewjpage, @ines_cim and @rpetit3 contributed to "Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications."
You can read it here: microbiologyresearch.org/con…
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Inês Mendes retweeted
12 Dec 2023
The Pathogen DOM is out now in @MicrobioSoc!
Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications - go.shr.lc/3TnjpNQ
#PHA4GE
15 Aug 2023
Wondering how to submit a new pathogen genome to INSDC? Or, how to build a dashboard to track the evolution of a diverse set of pathogens within the INSDC?🤔 Enter the Pathogen DOM, an open protocol for standardized data sharing.
osf.io/5cyu4
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Inês Mendes retweeted
17 Nov 2023
Excited to announce the @HealthHolland project ‘Predict and Prevent’ on the integration of pan-genomics, population dynamics and clinical outcomes to elucidate emerging pathogen threats using machine learning. A partnership between @UniUtrecht, @RIVM and @theiagen.
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Inês Mendes retweeted
8 Nov 2023
Happy to share our latest #preprint, presenting the upgraded “#INSaFLU - #TELEVIR: an open web-based bioinformatics suite for #viral #metagenomic #detection and #routine #genomic #surveillance”.
- tool: insaflu.insa.pt/
- preprint:
researchsquare.com/article/r…
👇
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Inês Mendes retweeted
27 Oct 2023
#MVIF #23 full program is OUT
We're happy to welcome YOU & speakers⬇️
⭐️ Keynote:
🇩🇪 @merenbey
⭐️ Selected talks:
🇳🇴@AhmedBargheet
🇮🇹 Antonia Bruno (@unimib)
🇨🇭@pscepanovic (@Roche)
⭐️ Highlights:
🇺🇸 @BioBohmann
🇮🇹 @GabrieleGhiotto
FREE registration hopin.com/events/microbiome-…
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Inês Mendes retweeted
Day 2 of the #PHA4GECon workshop with @cziscience @czbiohub hosting sessions on using metagenomics to survey vector-based pathogens 🧬🖥️
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Inês Mendes retweeted
Unlocking Genomic Insights for Public Health! 🌍
Join this session to explore how infrastructure drives progress in public health research.
Meet our speakers:
Abebe Aseffa Negeri
Jairo Méndez-Rico
Kim Ng
Gerald Mboowa
Joel Sevinsky
Furqan Kabir
#PHA4GEcon
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Inês Mendes retweeted
9 Oct 2023
Our paper examining critical errors in a cancer metagenomics study is now live in @mbiojournal. Work carried out with @StevenSalzberg1 @danbrewer @elapertea @YuchenGe1 @JenniferLu717 and others. Errors in bioinformatics can be subtle but important! doi.org/10.1128/mbio.01607-2…
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Inês Mendes retweeted
26 Sep 2023
Nothing could make me happier right now that this bioinformatics pipeline-generated csv file full of TB resistance data. All correct and ready for import into LIMS. All thanks to hard work of @theiagen #ClinicalWGS #TB
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Inês Mendes retweeted
20 Sep 2023
Have you recently used artificial intelligence (AI) to develop content? Our Director of Technical Innovation, @andrewjpage, recently published an editorial about this tool.
Read it here: microbiologyresearch.org/con…
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4 Sep 2023
What are the cool kids using for #metagenomic #binning these days? Still good old CONCOCT? MaxBin2? SemiBin2? 🦠👩💻
#Bioinformatics #help
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🚨Funding opportunity 🚨
The Essential #OpenSource Software for Science program supports maintenance, growth, development community engagement for critical tools used by biomedical scientists globally czi.co/OpenSourceSoftwareRFA
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29 Aug 2023
Host removal on #metagenomic sequences is an issue that, in my opinion, not enough attention is given. Bede exposes the major issues simply and beautifully in this blog post. A must read for anyone #sequencing!
29 Aug 2023
Blogged: precise removal of host DNA sequences
log.bede.im/2023/08/29/preci…
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Inês Mendes retweeted
22 Aug 2023
🆕Vacancy! We’re looking for an enthusiastic and motivated Bioinformatician to join our Food, Microbiome and Health programme.
💷 £35,300 to £43,750
🗓️ Apply by 3 October
➡️ buff.ly/3qFfv6P
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Inês Mendes retweeted
15 Aug 2023
The development of a standard pathogen data object model is a huge step forward for public health bioinformatics and data integration.
This should allow for much more flexible interoperability, help with future-proofing and QMS, and advance both research and public health use.
15 Aug 2023
Wondering how to submit a new pathogen genome to INSDC? Or, how to build a dashboard to track the evolution of a diverse set of pathogens within the INSDC?🤔 Enter the Pathogen DOM, an open protocol for standardized data sharing.
osf.io/5cyu4
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Inês Mendes retweeted
15 Aug 2023
Wondering how to submit a new pathogen genome to INSDC? Or, how to build a dashboard to track the evolution of a diverse set of pathogens within the INSDC?🤔 Enter the Pathogen DOM, an open protocol for standardized data sharing.
osf.io/5cyu4
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Inês Mendes retweeted
15 Aug 2023
On the 3rd episode of The Bioinformatics Lab podcast we discuss if AI Robots are going to replace bioinformaticians. Available from YouTube or your favourite podcast app.
Youtube: youtube.com/watch?v=-l5xy4nJ…
Soundcloud: soundcloud.com/the_bioinform…
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11 Aug 2023
very interesting read on the issue of removing host contamination (human) from sequencing reads!! I highly recommend you take a look!
#metagenomics #bioinformatics
7 Aug 2023
The critique of Poore et al’s Nature paper highlights the dangers of i) metagenomic classification using incomplete indexes and ii) human read subtraction using incomplete reference genomes. Some related thoughts 🧵
biorxiv.org/content/10.1101/…
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Inês Mendes retweeted
7 Aug 2023
Career highlight to be in some way linked to @donttrythis! Thanks, @molly_j_for the opportunity to highlight @theiagen’s work in public health pathogen genomics
7 Aug 2023
#Bioinformatics is a field that uses principles and approaches from #datascience and #computerscience, which it uses to make sense of large biological data sets.
Join us as we interview @kevinlibuit #CTO, on this latest podcast episode of Data Unchained:
youtu.be/y9P8INaU_ZI
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