17 Nov 2025
Reviewed a nice #CryoET paper in journal club today and it got me wondering... @ScienceMagazine has a very clear policy on data and computational methods. Why isn't this policy upheld for the #CryoEM and #TeamTomo communities? #OpenSoftwareAcceleratesScience
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30 Aug 2025
In addition to just thinking the work is cool, I'm really proud of the symbiotic relationship teamtomo.org has developed with the Lucas lab over the past year while they built their extensible implementation of 2DTM
#OpenSoftwareAcceleratesScience
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17 May 2024
Great stuff!
Suggestion: use Relion5,it will extract all available information specially if you have a mixture of free subunits/ribosome/ribosomes with/without factors.
Do not hesitate to reach out should you need help.
#OpenSoftwareAcceleratesScience
17 May 2024
Ours and @slavicaPD lab first take on CryoEM of ribosome structure with new fast (minutes) isolation methodology. Shout out to Jessey Erath. Screening images and 2 hours into data collection you can see nice and valuable ribosomes.
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20 Apr 2023
Finally, the optimized #Python code should work faster, and changes to the @GoHugoIO server allow smooth operation from remote workstations. The code, as always, is #opensource because #OpenSoftwareAcceleratesScience! 5/6
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2,493
28 Mar 2023
Why are we still permitting publication methods that don't provide source code and are hosted on non-functional servers? For me, this is one of the biggest issues in structural biology. #OpenSoftwareAcceleratesScience sciencedirect.com/science/arโฆ
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31 Dec 2022
10. Fast and easy-to-use #GPU-powered software! In 2022, we delivered updates that made our software more intuitive, faster, and more powerful. And we also updated our open API, because we believe that #OpenSoftwareAcceleratesScience.
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23 Sep 2022
Arctica pumping out great data! This is a ~130KDa membrane protein from @TheCHLeeLab and Relion4 on-the-fly align it very well!
#OpenSoftwareAcceleratesScience
(And of course GoldGrids for best imaging!)
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1 Aug 2022
On a side note, obviously the moment we have this up and running we will be developing a driver for SerialFIB (GitHub.com/sklumpe/SerialFIB) that communicates with it, because #OpenSoftwareAcceleratesScience . Also some other machine drivers maybe in the making ๐#TeamTomo #PFIB #FIB
1 Aug 2022
Introducing the Thermo Scientific Arctis Cryo-Plasma Focused Ion Beam (Cryo-PFIB), a new connected and automated microscope designed to advance the pace of cryo-electron #tomography (cryo-ET) research!
Read more: ter.li/e9ajl9
#TeamTomo #cryoEM
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21 Jul 2022
SmartScope.org manuscript accepted! The final version will be coming out soon and the code will be made public at that point. Stay tuned!
We've been working on the docs and install process to make it easier to use. #CryoEM #Automation
#OpenSoftwareAcceleratesScience
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15 Jul 2022
Session 4 on pushing the limits of single particle #cryoEM at #FDcryoEM is starting! Chaired by @Davidbhella and Vicki Gold @the_gold_lab. Now it's @SjorsScheres @MRC_LMB on helical reconstruction for high throughput determination of #amyloids. #OpenSoftwareAcceleratesScience
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23 Jun 2022
I am very grateful to @rfleiro and @SjorsScheres for endless advice and suggestions on cryoEM. This structure was integrally done with ctffind4 and Relion4 because we believe:
#OpenSoftwareAcceleratesScience
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19 Jun 2022
Thank you for clarifying ๐ and thank you for all your efforts in cryo-EM! #OpenSoftwareAcceleratesScience
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19 May 2022
I remember reading his Paper about tau filaments and Cryo-em before I joined EMBL as a PhD student. Now I have the honor to listen it in Person. @instructhub @SjorsScheres #OpenSoftwareAcceleratesScience
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9 May 2022
The code will be fully open-source under BSD-3 license after a closed beta where we'll test and debug in a few different contexts and polish the overall experience. #OpenSoftwareAcceleratesScience
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4 May 2022
Spectacular talk by @GrantCryoEMLab @UWBiochem about news on cisTEM! All test data is freely available at #EMPIAR! #OpenSoftwareAcceleratesScience #SharingIsCaring
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9 Dec 2021
After some Python tinkering (pun intended) we have rln4 on the fly running!
Real happy. Thanks to @SjorsScheres @ColinMPalmer @Guillawme @AlisterBurt for being open source enthusiasts and allow others to use their code.
#OpenSoftwareAcceleratesScience
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23 Sep 2021
RELION - 4.0 - subtomogram averaging and faster 2D classification!!
#OpenSoftwareAcceleratesScience #cryoEM
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5 Aug 2021
5 Aug 2021
Finally scripting on the FIB again this morning and did my first attempt at automated Waffle using SerialFIB (Perpendicular cut, nodge lamella) during the #MandM2021 sessions. Needs some optimization and real world trial in cryo, but I like my wanna-be copper lamellae ๐
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23 Jul 2021
Great to hear. I'm looking forward to hearing more on how you use them!
#OpenSoftwareAcceleratesScience
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